Index
A
Active contours, 308
After cryo-FIB milling, 84
Algebraic reconstruction technique, 16, 209,
216
Alignment algorithms, 80
Alignment and reconstruction, 77
Alignment of tilt series, 275
Alignment precision, 275
Align subtomograms, 253
Amplitude contrast, 19
Angular range, 24
Angular variations, 40
Anisotropic, 11
Anisotropy, 227
Annular Dark-Field (ADF), 34, 38
Antibodies, 158
Antibody elution, 158
Antigenicity, 151
Applications, 248
Array tomography, 150, 153
Atomic resolution, 272
ATP synthases, 251
Automated TEM (ATEM), 150
Automatically, 71
Avoid excessive damage, 73
Axoneme, 250
B
Bacterial cytoskeletal proteins, 84
Bandpass filter, 286
Beam cross-section, 11
Beltrami flow–isotropic diffusion, 226
Better processing, 85
BF contrast, 46
Bidirectional schemes, 76
Bilateral filter, 224, 294, 295
Biochemical reductionist approach, 4
Biological material, 64
Blotting, 66
Bright-Field (BF), 34
Bright Field (BF) detector, 39, 41
C
Carbon, 174
Causality criterion, 291
Cell shape, 82
Cellular systems, 303
Central section theorem, 210, 213
CET reconstructions, 47
Characteristic scattering angle, 36, 37
Classical preparations, 263
Classification, 275
Classification approaches, 246
CLEM, 81
Coat proteins, 250
Coherence Enhancing Diffusion (CED), 292,
293
Coherent, 69
Colloidal gold, 14
Compressed sensing, 227
Computational molecular phenotyping, 150
Concept, 7
Confocal microscopy, 1
Conical tilt, 226
Conical tomography, 267
Consecutive steps of classification, 247
Constrained cross correlation, 243
Constrained principal-component analysis,
246, 254
Constraints-based method, 227
Contextualize results from more reductionist
approaches, 84
Contrast transfer function, 64, 211, 221, 265,
302
Convex hulls, 306
Correlative imaging, 307
Correlative methods, 52
© Springer International Publishing AG 2018
E. Hanssen (ed.), Cellular Imaging, Biological and Medical Physics,
Biomedical Engineering, https://doi.org/10.1007/978-3-319-68997-5
319
A
Active contours, 308
After cryo-FIB milling, 84
Algebraic reconstruction technique, 16, 209,
216
Alignment algorithms, 80
Alignment and reconstruction, 77
Alignment of tilt series, 275
Alignment precision, 275
Align subtomograms, 253
Amplitude contrast, 19
Angular range, 24
Angular variations, 40
Anisotropic, 11
Anisotropy, 227
Annular Dark-Field (ADF), 34, 38
Antibodies, 158
Antibody elution, 158
Antigenicity, 151
Applications, 248
Array tomography, 150, 153
Atomic resolution, 272
ATP synthases, 251
Automated TEM (ATEM), 150
Automatically, 71
Avoid excessive damage, 73
Axoneme, 250
B
Bacterial cytoskeletal proteins, 84
Bandpass filter, 286
Beam cross-section, 11
Beltrami flow–isotropic diffusion, 226
Better processing, 85
BF contrast, 46
Bidirectional schemes, 76
Bilateral filter, 224, 294, 295
Biochemical reductionist approach, 4
Biological material, 64
Blotting, 66
Bright-Field (BF), 34
Bright Field (BF) detector, 39, 41
C
Carbon, 174
Causality criterion, 291
Cell shape, 82
Cellular systems, 303
Central section theorem, 210, 213
CET reconstructions, 47
Characteristic scattering angle, 36, 37
Classical preparations, 263
Classification, 275
Classification approaches, 246
CLEM, 81
Coat proteins, 250
Coherence Enhancing Diffusion (CED), 292,
293
Coherent, 69
Colloidal gold, 14
Compressed sensing, 227
Computational molecular phenotyping, 150
Concept, 7
Confocal microscopy, 1
Conical tilt, 226
Conical tomography, 267
Consecutive steps of classification, 247
Constrained cross correlation, 243
Constrained principal-component analysis,
246, 254
Constraints-based method, 227
Contextualize results from more reductionist
approaches, 84
Contrast transfer function, 64, 211, 221, 265,
302
Convex hulls, 306
Correlative imaging, 307
Correlative methods, 52
© Springer International Publishing AG 2018
E. Hanssen (ed.), Cellular Imaging, Biological and Medical Physics,
Biomedical Engineering, https://doi.org/10.1007/978-3-319-68997-5
319