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2.6 Å reconstruction of rotavirus VP6. eLife e06980 (2015)
80. C.A. Diebolder, F.G.A. Faas, A.J. Koster, R.I. Koning, Conical Fourier shell correlation
applied to electron tomograms. J. Struct. Biol. 190(2), 215–223 (2015)
81. J.-J. Fernandez, Computational methods for electron tomography. Micron 43(10),
1010–1030 (2012)
82. P. van der Heide, X.-P. Xu, B.J. Marsh, D. Hanein, N. Volkmann, Efficient automatic noise
reduction of electron tomographic reconstructions based on iterative median filtering.
J. Struct. Biol. 158(2), 196–204 (2007)
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nonlinear anisotropic diffusion. J. Struct. Biol. 135(3), 239–250 (2001)
84. R. Narasimha et al., Evaluation of denoising algorithms for biological electron tomography.
J. Struct. Biol. 164(1), 7–17 (2008)
85. G. Cardone, K. Grünewald, A.C. Steven, A resolution criterion for electron tomography
based on cross-validation. J. Struct. Biol. 151(2), 117–129 (2005)
86. P.A. Penczek, Chapter Three—Resolution Measures in Molecular Electron Microscopy, in
Cryo-EM, Part B: 3-D Reconstruction, vol. 482 (Academic Press, 2010), pp. 73–100
87. D. Castaño-Díez, M. Kudryashev, M. Arheit, H. Stahlberg, Dynamo: a flexible, user-friendly
development tool for subtomogram averaging of cryo-EM data in high-performance
computing environments. J. Struct. Biol. 178(2), 139–151 (2012)
88. D. Nicastro, C. Schwartz, J. Pierson, R. Gaudette, M.E. Porter, J.R. McIntosh, The molecular
architecture of axonemes revealed by cryoelectron tomography. Science 313(5789),
944–948 (2006)
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Methods 9(9), 853–854 (2012)
90. F. Förster, B.-G. Han, and M. Beck, “Chapter Eleven—Visual Proteomics, in Cryo-EM, Part
C: Analyses, Interpretation, and Case studies, vol. 483, (Academic Press, 2010),
pp. 215–243
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force-generating role in cell division. EMBO J. 26, 4694–4708 (2007)
92. Y.-W. Chang, et al., Correlated cryogenic photoactivated localization microscopy and
cryo-electron tomography. Nat. Methods, vol. advance online publication, (2014)
93. Q. Wang, C.P. Mercogliano, J. Löwe, A ferritin-based label for cellular electron
cryotomography. Struct. Lond. Engl. 1993 19(2), 147–154 (2011)
94. M. Beeby, structural diversity of bacterial flagellar motors. Presented at the MicroMorning,
Caltech, (14-Jul-2011)
95. P. Abrusci et al., Architecture of the major component of the type III secretion system export
apparatus. Nat. Struct. Mol. Biol. 20(1), 99–104 (2013)
96. K. Song et al., In situ localization of N and C termini of subunits of the flagellar
nexin-dynein regulatory complex (N-DRC) using SNAP tag and cryo-electron tomography.
J. Biol. Chem. 290(9), 5341–5353 (2015)
97. S. Velankar et al., PDBe: improved accessibility of macromolecular structure data from PDB
and EMDB. Nucleic Acids Res. 44(D1), D385–D395 (2016)
98. A. Iudin, P.K. Korir, J. Salavert-Torres, G.J. Kleywegt, A. Patwardhan, EMPIAR: a public
archive for raw electron microscopy image data. Nat. Methods 13(5), 387–388 (2016)
99. A. Nans, H.R. Saibil, R.D. Hayward, Pathogen-host reorganisation during Chlamydia
invasion revealed by cryo-electron tomography. Cell. Microbiol. p. n/a-n/a, (2014)
100. A. Kawamoto et al., Common and distinct structural features of Salmonella injectisome and
flagellar basal body. Sci. Rep. 3, 3369 (2013)
101. S. Asano et al., A molecular census of 26S proteasomes in intact neurons. Science 347
(6220), 439–442 (2015)
92
J. L. Ferreira et al.