68
P. Sjödin et al.
Pudlo P, Marin JM, Estoup A, Cornuet JM, Gautier M, Robert CP (2016) Reliable ABC model
choice via random forests. Bioinformatics 32:859–866
Purcell S, Neale B, Todd-Brown K, Thomas L, Ferreira MAR et al (2007) PLINK: a toolset for
whole-genome association and population-based linkage analysis. Am Hum Genet 81:559–575
Quinn GP, Keough MJ (2002) Experimental design and data analysis for biologists. Cambridge
University Press, Cambridge
Reich D, Thangaraj K, Patterson N, Price AL, Singh L (2009) Reconstructing Indian population
history. Nature 461:489–494
Reich D, Green RE, Kircher M, Krause J, Patterson N et al (2010) Genetic history of an archaic
hominin group from Denisova Cave in Siberia. Nature 468:1053–1060
Reynolds J, Weir BS, Cockerham CC (1983) Estimation of the coancestry coefficient: basis for a
short-term genetic distance. Genetics 105:767–779
Roeder K, Escobar M, Kadane JB, Balazs I (1998) Measuring heterogeneity in forensic databases
using hierarchical Bayes models. Biometrika 85:269–287
Rogers JS (1972) Measures of similarity and genetic distance. In: Studies in genetics VII.
University of Texas Publication 7213. Austin, Texas, pp 145−153
Rosenberg NA (2004) Distruct: a program for the graphical display of population structure. Mol
Ecol Notes 4:137–138
Rosenberg NA, Pritchard JK, Weber JL, Cann HM, Kidd KK et al (2002) Genetic structure of
human populations. Science 298:2381–2385
Rousset F (2013) Exegeses on maximum genetic differentiation. Genetics 194:557–559
Ryman N, Leimar O (2009) G(ST) is still a useful measure of genetic differentiation – a comment
on Jost’s D. Mol Ecol 18:2084–2087
Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425
Schlebusch CM, Skoglund P, Sjödin P, Gattepaille LM, Hernandez D et al (2012) Genomic
variation in seven Khoe-San groups reveals adaptation and complex African history. Science
338:374–379
Shriver M, Jin L, Boerwinkle E, Deka R, Ferrell RE et al (1995) A novel measure of genetic
distance for highly polymorphic tandem repeat loci. Mol Biol Evol 12:914–920
Slatkin M (1995) A measure of population subdivision based on microsatellite allele frequencies.
Genetics 139:457–462
Tang H, Peng J, Wang P, Risch NJ (2005) Estimation of individual admixture: analytical and study
design considerations. Genet Epidemiol 28:289–301
Tellier A, Pfaffelhuber P, Haubold B, Naduvilezhath L, Rose LE et al (2011) Estimating parameters
of speciation models based on refined summaries of the joint site-frequency spectrum. PLoS
One 6:e18155
Veeramah KR, Hammer MF (2014) The impact of whole-genome sequencing on the reconstruction
of human population history. Nat Rev Genet 15:149–162
Venter JC, Adams MD, Myers EW, Li PW, Mural RJ et al (2001) The sequence of the human
genome. Science 291(5507):1304–51. https://doi.org/10.1126/science.1058040. Erratum in:
Science 292(5523):1838 (2001). PMID: 11181995.
Weir BS (1996) Genetic data analysis II. Sinauer Associates, Sunderland
Weir BS, Cockerham CC (1984) Estimating F-statistics for the analysis of population structure.
Evolution 38:1358–1370
Wright S (1949) The genetical structure of populations. Ann Hum Gen 15:323–354
P. Sjödin et al.
Pudlo P, Marin JM, Estoup A, Cornuet JM, Gautier M, Robert CP (2016) Reliable ABC model
choice via random forests. Bioinformatics 32:859–866
Purcell S, Neale B, Todd-Brown K, Thomas L, Ferreira MAR et al (2007) PLINK: a toolset for
whole-genome association and population-based linkage analysis. Am Hum Genet 81:559–575
Quinn GP, Keough MJ (2002) Experimental design and data analysis for biologists. Cambridge
University Press, Cambridge
Reich D, Thangaraj K, Patterson N, Price AL, Singh L (2009) Reconstructing Indian population
history. Nature 461:489–494
Reich D, Green RE, Kircher M, Krause J, Patterson N et al (2010) Genetic history of an archaic
hominin group from Denisova Cave in Siberia. Nature 468:1053–1060
Reynolds J, Weir BS, Cockerham CC (1983) Estimation of the coancestry coefficient: basis for a
short-term genetic distance. Genetics 105:767–779
Roeder K, Escobar M, Kadane JB, Balazs I (1998) Measuring heterogeneity in forensic databases
using hierarchical Bayes models. Biometrika 85:269–287
Rogers JS (1972) Measures of similarity and genetic distance. In: Studies in genetics VII.
University of Texas Publication 7213. Austin, Texas, pp 145−153
Rosenberg NA (2004) Distruct: a program for the graphical display of population structure. Mol
Ecol Notes 4:137–138
Rosenberg NA, Pritchard JK, Weber JL, Cann HM, Kidd KK et al (2002) Genetic structure of
human populations. Science 298:2381–2385
Rousset F (2013) Exegeses on maximum genetic differentiation. Genetics 194:557–559
Ryman N, Leimar O (2009) G(ST) is still a useful measure of genetic differentiation – a comment
on Jost’s D. Mol Ecol 18:2084–2087
Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425
Schlebusch CM, Skoglund P, Sjödin P, Gattepaille LM, Hernandez D et al (2012) Genomic
variation in seven Khoe-San groups reveals adaptation and complex African history. Science
338:374–379
Shriver M, Jin L, Boerwinkle E, Deka R, Ferrell RE et al (1995) A novel measure of genetic
distance for highly polymorphic tandem repeat loci. Mol Biol Evol 12:914–920
Slatkin M (1995) A measure of population subdivision based on microsatellite allele frequencies.
Genetics 139:457–462
Tang H, Peng J, Wang P, Risch NJ (2005) Estimation of individual admixture: analytical and study
design considerations. Genet Epidemiol 28:289–301
Tellier A, Pfaffelhuber P, Haubold B, Naduvilezhath L, Rose LE et al (2011) Estimating parameters
of speciation models based on refined summaries of the joint site-frequency spectrum. PLoS
One 6:e18155
Veeramah KR, Hammer MF (2014) The impact of whole-genome sequencing on the reconstruction
of human population history. Nat Rev Genet 15:149–162
Venter JC, Adams MD, Myers EW, Li PW, Mural RJ et al (2001) The sequence of the human
genome. Science 291(5507):1304–51. https://doi.org/10.1126/science.1058040. Erratum in:
Science 292(5523):1838 (2001). PMID: 11181995.
Weir BS (1996) Genetic data analysis II. Sinauer Associates, Sunderland
Weir BS, Cockerham CC (1984) Estimating F-statistics for the analysis of population structure.
Evolution 38:1358–1370
Wright S (1949) The genetical structure of populations. Ann Hum Gen 15:323–354