234
L. S. Emery and J. M. Akey
Tennessen JA, Bigham AW, O’Connor TD et al (2012) Evolution and functional impact of rare
coding variation from deep sequencing of human exomes. Science 337:64–69. https://doi.org/
10.1126/science.1219240
Teshima KM, Coop G, Przeworski M (2006) How reliable are empirical genomic scans for
selective sweeps? Genome Res 16:702–712. https://doi.org/10.1101/gr.5105206
Tishkoff SA, Varkonyi R, Cahinhinan N et al (2001) Haplotype diversity and linkage disequilibrium at human G6PD: recent origin of alleles that confer malarial resistance. Science
293:455–462. https://doi.org/10.1126/science.1061573
Tishkoff SA, Reed FA, Ranciaro A et al (2007) Convergent adaptation of human lactase persistence
in Africa and Europe. Nat Genet 39:31–40. https://doi.org/10.1038/ng1946
Tishkoff SA, Reed FA, Friedlaender FR et al (2009) The genetic structure and history of Africans
and African Americans. Science 324:1035–1044. https://doi.org/10.1126/science.1172257
Verrelli BC, McDonald JH, Argyropoulos G et al (2002) Evidence for balancing selection from
nucleotide sequence analyses of human G6PD. Am J Hum Genet 71:1112–1128. https://doi.org/
10.1086/344345
Vigilant L, Stoneking M, Harpending H et al (1991) African populations and the evolution of
human mitochondrial DNA. Science 253:1503–1507
Vina MAF, Hollenbach JA, Lyke KE et al (2012) Tracking human migrations by the analysis of
the distribution of HLA alleles, lineages and haplotypes in closed and open populations. Philos
Trans R Soc Lond Ser B Biol Sci 367:820–829. https://doi.org/10.1098/rstb.2011.0320
Vitti JJ, Cho MK, Tishkoff SA, Sabeti PC (2012) Human evolutionary genomics: ethical and
interpretive issues. Trends Genet 28:137–145. https://doi.org/10.1016/j.tig.2011.12.001
Voight BF, Kudaravalli S, Wen X, Pritchard JK (2006) A map of recent positive selection in the
human genome. PLoS Biol 4:e72. https://doi.org/10.1371/journal.pbio.0040072
Wang ET, Kodama G, Baldi P, Moyzis RK (2006) Global landscape of recent inferred Darwinian selection for Homo sapiens. Proc Natl Acad Sci 103:135–140. https://doi.org/10.1073/
pnas.0509691102
Williamson SH, Hubisz MJ, Clark AG et al (2007) Localizing recent adaptive evolution in the
human genome. PLoS Genet 3:e90. https://doi.org/10.1371/journal.pgen.0030090
Xu S, Li S, Yang Y et al (2011) A genome-wide search for signals of high-altitude adaptation in
Tibetans. Mol Biol Evol 28:1003–1011. https://doi.org/10.1093/molbev/msq277
Zhang C, Bailey DK, Awad T, Liu G, Xing G, Cao M, Valmeekam V, Retief J, Matsuzaki H,
Taub M, Seielstad M, Kennedy GC (2006 Sep 1) A whole genome long-range haplotype
(WGLRH) test for detecting imprints of positive selection in human populations. Bioinformatics
22(17):2122–2128. https://doi.org/10.1093/bioinformatics/btl365
Zhong M, Lange K, Papp JC, Fan R (2010) A powerful score test to detect positive selection in
genome-wide scans. Eur J Hum Genet 18:1148–1159. https://doi.org/10.1038/ejhg.2010.60
Zhong M, Zhang Y, Lange K, Fan R (2011) A cross-population extended haplotype-based
homozygosity score test to detect positive selection in genome-wide scans. Stat Interface 4:51–
63
L. S. Emery and J. M. Akey
Tennessen JA, Bigham AW, O’Connor TD et al (2012) Evolution and functional impact of rare
coding variation from deep sequencing of human exomes. Science 337:64–69. https://doi.org/
10.1126/science.1219240
Teshima KM, Coop G, Przeworski M (2006) How reliable are empirical genomic scans for
selective sweeps? Genome Res 16:702–712. https://doi.org/10.1101/gr.5105206
Tishkoff SA, Varkonyi R, Cahinhinan N et al (2001) Haplotype diversity and linkage disequilibrium at human G6PD: recent origin of alleles that confer malarial resistance. Science
293:455–462. https://doi.org/10.1126/science.1061573
Tishkoff SA, Reed FA, Ranciaro A et al (2007) Convergent adaptation of human lactase persistence
in Africa and Europe. Nat Genet 39:31–40. https://doi.org/10.1038/ng1946
Tishkoff SA, Reed FA, Friedlaender FR et al (2009) The genetic structure and history of Africans
and African Americans. Science 324:1035–1044. https://doi.org/10.1126/science.1172257
Verrelli BC, McDonald JH, Argyropoulos G et al (2002) Evidence for balancing selection from
nucleotide sequence analyses of human G6PD. Am J Hum Genet 71:1112–1128. https://doi.org/
10.1086/344345
Vigilant L, Stoneking M, Harpending H et al (1991) African populations and the evolution of
human mitochondrial DNA. Science 253:1503–1507
Vina MAF, Hollenbach JA, Lyke KE et al (2012) Tracking human migrations by the analysis of
the distribution of HLA alleles, lineages and haplotypes in closed and open populations. Philos
Trans R Soc Lond Ser B Biol Sci 367:820–829. https://doi.org/10.1098/rstb.2011.0320
Vitti JJ, Cho MK, Tishkoff SA, Sabeti PC (2012) Human evolutionary genomics: ethical and
interpretive issues. Trends Genet 28:137–145. https://doi.org/10.1016/j.tig.2011.12.001
Voight BF, Kudaravalli S, Wen X, Pritchard JK (2006) A map of recent positive selection in the
human genome. PLoS Biol 4:e72. https://doi.org/10.1371/journal.pbio.0040072
Wang ET, Kodama G, Baldi P, Moyzis RK (2006) Global landscape of recent inferred Darwinian selection for Homo sapiens. Proc Natl Acad Sci 103:135–140. https://doi.org/10.1073/
pnas.0509691102
Williamson SH, Hubisz MJ, Clark AG et al (2007) Localizing recent adaptive evolution in the
human genome. PLoS Genet 3:e90. https://doi.org/10.1371/journal.pgen.0030090
Xu S, Li S, Yang Y et al (2011) A genome-wide search for signals of high-altitude adaptation in
Tibetans. Mol Biol Evol 28:1003–1011. https://doi.org/10.1093/molbev/msq277
Zhang C, Bailey DK, Awad T, Liu G, Xing G, Cao M, Valmeekam V, Retief J, Matsuzaki H,
Taub M, Seielstad M, Kennedy GC (2006 Sep 1) A whole genome long-range haplotype
(WGLRH) test for detecting imprints of positive selection in human populations. Bioinformatics
22(17):2122–2128. https://doi.org/10.1093/bioinformatics/btl365
Zhong M, Lange K, Papp JC, Fan R (2010) A powerful score test to detect positive selection in
genome-wide scans. Eur J Hum Genet 18:1148–1159. https://doi.org/10.1038/ejhg.2010.60
Zhong M, Zhang Y, Lange K, Fan R (2011) A cross-population extended haplotype-based
homozygosity score test to detect positive selection in genome-wide scans. Stat Interface 4:51–
63
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