479
Kchouk M, Gibrat J, Elloumi M (2017) Generations of sequencing technologies: from first to next
generation. Biol Med (Aligarh) 9:3
Klein L, Spoljaric M, Torales S (2019) Identificación de genotipos estables en 19 familias de
Prosopis alba usando marcadores de microsatélites y parámetros de productividad. Quebracho
27:26–36
Krishnan N, Pattnaik S, Jain P, Gaur P, Choudhary R, Vaidyanathan S et al (2012) A draft of the
genome and four transcriptomes of a medicinal and pesticidal angiosperm Azadirachta indica.
BMC Genomics 13:464
Lande R, Thompson R (1990) Efficiency of marker-assisted selection in the improvement of quantitative traits. Genetics 124:743–756
Lesur I, Le Provost G, Bento P, Da Silva C, Leplé J-C, Murat F et al (2015) The oak gene expression atlas: insights into Fagaceae genome evolution and the discovery of genes regulated during
bud dormancy release. BMC Genomics 16:112
Liu L, Li Y, Li S, Hu N, He Y, Pong R, Lin D, Lu L, Law M (2012) Comparison of nextgeneration sequencing systems. J Biomed Biotechnol. Article ID 251364. https://doi.
org/10.1155/2012/251364
Liu F, Hong Z, Yang Z, Zhang N, Liu X, Xu D (2019) De novo transcriptome analysis of Dalbergia
odorifera T. Chen (Fabaceae) and transferability of SSR markers developed from the transcriptome. Forests 10:98
Logacheva M, Kasianov A, Vinogradov D, Samigullin T, Gelfand M, Makeev V, Penin A (2011)
De novo sequencing and characterization of floral transcriptome in two species of buckwheat
(Fagopyrum). BMC Genomics 12:30
López de Heredia U, Vázquez-Poletti J (2016) RNA-seq analysis in forest tree species: bioinformatic problems and solutions. Tree Genet Genomes 12:30
Mahony CR, MacLachlan IR, Lind BM, Yoder JB, Wang T, Aitken SN (2019) Evaluating genomic
data for management of local adaptation in a changing climate: a lodgepole pine case study.
https://doi.org/10.1101/568725
Marchelli P, Caron H, Azpilicueta M, Gallo L (2008) A new set of highly polymorphic nuclear
microsatellite markers for Nothofagus nervosa and related South American species. Silvae
Genet 57:82–85
Marchelli P, Thomas E, Azpilicueta M, van Zonneveld M, Gallo L (2017) Integrating genetics and
suitability modelling to bolster climate change adaptation planning in Patagonian Nothofagus
forests. Tree Genet Genom 13:119
Matias E, Ferreira A, Nascimento Silva M, Alencar Carvalho V, Melo Coutinho H, Martins da
Costa J (2015) The genus Cordia: botanists, ethno, chemical and pharmacological aspects.
Revista Brasileira de Farmacognosia 25:542–552
Martins S (2012) Restauração ecológica de ecossistemas degradados. Visçosa, Brasil. UFV 293 p
Menezes J, Machado F, Lemos T, Silveira E, Filho R, Pessoa O (2004) Sesquiterpenes and a
Phenylpropanoid from Cordia trichotoma. Z Naturforsch 59:19–22
Meuwissen T, Hayes B, Goddard M (2001) Prediction of total genetic value using genome-wide
dense marker maps. Genetics 157:1819–1829
Minamikawa M, Takada N, Terakami S, Saito T, Onogi A, Kajiya-Kanegae H et al (2018) Genomewide association study and genomic prediction using parental and breeding populations of
Japanese pear (Pyrus pyrifolia Nakai). Sci Rep 8:2045–2322
Mottura M, Finkeldey R, Verga A, Gailing O (2005) Development and characterization of microsatellite markers for Prosopis chilensis and Prosopis flexuosa and cross-species amplification.
Mol Ecol Not 5:487–489
Naidoo S, Slippers B, Plett J, Coles D, Oates C (2019) The road to resistance in forest trees. Front
Plant Sci 10:273
Neale D, Williams C (1991) Restriction-Fragment-Length-Polymorphism mapping in conifers and
applications to forest genetics and tree improvement. Can J Forest Res Revue Can Rech Forest
21:545–554
Neale D (2007) Genomics to tree breeding and forest health. Curr Opin Genet Dev 17:539–544
17 Application of High-Throughput Sequencing Technologies in Native Forest Tree…
Kchouk M, Gibrat J, Elloumi M (2017) Generations of sequencing technologies: from first to next
generation. Biol Med (Aligarh) 9:3
Klein L, Spoljaric M, Torales S (2019) Identificación de genotipos estables en 19 familias de
Prosopis alba usando marcadores de microsatélites y parámetros de productividad. Quebracho
27:26–36
Krishnan N, Pattnaik S, Jain P, Gaur P, Choudhary R, Vaidyanathan S et al (2012) A draft of the
genome and four transcriptomes of a medicinal and pesticidal angiosperm Azadirachta indica.
BMC Genomics 13:464
Lande R, Thompson R (1990) Efficiency of marker-assisted selection in the improvement of quantitative traits. Genetics 124:743–756
Lesur I, Le Provost G, Bento P, Da Silva C, Leplé J-C, Murat F et al (2015) The oak gene expression atlas: insights into Fagaceae genome evolution and the discovery of genes regulated during
bud dormancy release. BMC Genomics 16:112
Liu L, Li Y, Li S, Hu N, He Y, Pong R, Lin D, Lu L, Law M (2012) Comparison of nextgeneration sequencing systems. J Biomed Biotechnol. Article ID 251364. https://doi.
org/10.1155/2012/251364
Liu F, Hong Z, Yang Z, Zhang N, Liu X, Xu D (2019) De novo transcriptome analysis of Dalbergia
odorifera T. Chen (Fabaceae) and transferability of SSR markers developed from the transcriptome. Forests 10:98
Logacheva M, Kasianov A, Vinogradov D, Samigullin T, Gelfand M, Makeev V, Penin A (2011)
De novo sequencing and characterization of floral transcriptome in two species of buckwheat
(Fagopyrum). BMC Genomics 12:30
López de Heredia U, Vázquez-Poletti J (2016) RNA-seq analysis in forest tree species: bioinformatic problems and solutions. Tree Genet Genomes 12:30
Mahony CR, MacLachlan IR, Lind BM, Yoder JB, Wang T, Aitken SN (2019) Evaluating genomic
data for management of local adaptation in a changing climate: a lodgepole pine case study.
https://doi.org/10.1101/568725
Marchelli P, Caron H, Azpilicueta M, Gallo L (2008) A new set of highly polymorphic nuclear
microsatellite markers for Nothofagus nervosa and related South American species. Silvae
Genet 57:82–85
Marchelli P, Thomas E, Azpilicueta M, van Zonneveld M, Gallo L (2017) Integrating genetics and
suitability modelling to bolster climate change adaptation planning in Patagonian Nothofagus
forests. Tree Genet Genom 13:119
Matias E, Ferreira A, Nascimento Silva M, Alencar Carvalho V, Melo Coutinho H, Martins da
Costa J (2015) The genus Cordia: botanists, ethno, chemical and pharmacological aspects.
Revista Brasileira de Farmacognosia 25:542–552
Martins S (2012) Restauração ecológica de ecossistemas degradados. Visçosa, Brasil. UFV 293 p
Menezes J, Machado F, Lemos T, Silveira E, Filho R, Pessoa O (2004) Sesquiterpenes and a
Phenylpropanoid from Cordia trichotoma. Z Naturforsch 59:19–22
Meuwissen T, Hayes B, Goddard M (2001) Prediction of total genetic value using genome-wide
dense marker maps. Genetics 157:1819–1829
Minamikawa M, Takada N, Terakami S, Saito T, Onogi A, Kajiya-Kanegae H et al (2018) Genomewide association study and genomic prediction using parental and breeding populations of
Japanese pear (Pyrus pyrifolia Nakai). Sci Rep 8:2045–2322
Mottura M, Finkeldey R, Verga A, Gailing O (2005) Development and characterization of microsatellite markers for Prosopis chilensis and Prosopis flexuosa and cross-species amplification.
Mol Ecol Not 5:487–489
Naidoo S, Slippers B, Plett J, Coles D, Oates C (2019) The road to resistance in forest trees. Front
Plant Sci 10:273
Neale D, Williams C (1991) Restriction-Fragment-Length-Polymorphism mapping in conifers and
applications to forest genetics and tree improvement. Can J Forest Res Revue Can Rech Forest
21:545–554
Neale D (2007) Genomics to tree breeding and forest health. Curr Opin Genet Dev 17:539–544
17 Application of High-Throughput Sequencing Technologies in Native Forest Tree…