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10. Danecek P, Auton A, Abecasis G, Albers CA, Banks E, DePristo MA, et al. The variant call
format and VCFtools. Bioinformatics. 2011;27(15):2156–8.
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104
M. Kappelmann-Fenzl
integrative genomics viewer. Cancer Res. 2017;77(21):e31–e4.
5. Robinson JT, Thorvaldsdottir H, Winckler W, Guttman M, Lander ES, Getz G, et al. Integrative
genomics viewer. Nat Biotechnol. 2011;29(1):24–6.
6. Thorvaldsdottir H, Robinson JT, Mesirov JP. Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration. Brief Bioinform. 2013;14(2):178–92.
7. Quinlan AR. BEDTools: the Swiss-army tool for genome feature analysis. Curr Protoc Bioinformatics. 2014;47:11–2. 1–34
8. Quinlan AR, Hall IM. BEDTools: a flexible suite of utilities for comparing genomic features.
Bioinformatics. 2010;26(6):841–2.
9. Gericke A, Munson M, Ross AH. Regulation of the PTEN phosphatase. Gene. 2006;374:1–9.
10. Danecek P, Auton A, Abecasis G, Albers CA, Banks E, DePristo MA, et al. The variant call
format and VCFtools. Bioinformatics. 2011;27(15):2156–8.
11. Leinonen R, Sugawara H, Shumway M. International nucleotide sequence database C. The
sequence read archive. Nucleic Acids Res. 2011;39(Database issue):D19–21.
12. Trivedi UH, Cezard T, Bridgett S, Montazam A, Nichols J, Blaxter M, et al. Quality control of
next-generation sequencing data without a reference. Front Genet. 2014;5:111.
104
M. Kappelmann-Fenzl