Erb TJ (2011) Carboxylases in natural and synthetic microbial pathways. Appl Environ Microbiol
77:8466–8477
Erb TJ, Zarzycki J (2016) Biochemical and synthetic biology approaches to improve photosynthetic
CO 2 -fixation. Curr Opin Chem Biol 34:72–79
Eudes A, Sathitsuksanoh N, Baidoo EEK, George A, Liang Y, Yang F, Singh S, Keasling JD,
Simmons BA, Loqué D (2015) Expression of a bacterial 3-dehydroshikimate dehydratase
reduces lignin content and improves biomass saccharification efficiency. Plant Biotechnol J
13:1241–1250
Eudes A, Berthomieu R, Hao Z, Zhao N, Benites VT, Baidoo EEK, Loque D (2018) Production of
muconic acid in plants. Metab Eng 46:13–19
Fan J, Yan C, Roston R, Shanklin J, Xu C (2014) Arabidopsis lipins, PDAT1 acyltransferase, and
SDP1 triacylglycerol lipase synergistically direct fatty acids toward β-oxidation, thereby
maintaining membrane lipid homeostasis. Plant Cell 26(10):4119–4134
Fang H, Li D, Kang J, Jiang P, Sun J, Zhang D (2018) Metabolic engineering of Escherichia coli for
de novo biosynthesis of vitamin B12. Nat Commun 9(1):4917
FAO (2017) Nutrition-sensitive agriculture and food systems in practice Options for intervention
Revised edition Food and Agriculture Organization of the United Nations Rome
Farré G, Perez-Fons L, Decourcelle M, Breitenbach J, Hem S, Zhu C, Capell T, Christou C, Fraser
PD, Sandmann G (2016) Metabolic engineering of astaxanthin biosynthesis in maize endosperm
and characterization of a prototype high oil hybrid. Transgenic Res 25:477–489
Ferry MS, Hasty J, Cookson NA (2012) Synthetic biology approaches to biofuel production.
Editorial Biofuels 3(1):9–12
Flores Bueso Y, Tangney M (2017) Synthetic biology in the driving seat of the bioeconomy. Trends
Biotechnol 35(5):373–378
Fossati E, Narcross L, Ekins A, Falgueyret JP, Martin VJ (2015) Synthesis of morphinan alkaloids
in Saccharomyces cerevisiae. PLoS One 10:e0124459
Fowler CC, Brown ED, Li Y (2010) Using a riboswitch sensor to examine coenzyme B(12) metabolism and transport in E. coli. Chem Biol 17(7):756–765
Friedel S, Usadel B, von Wirén N, Sreenivasulu N (2012) Reverse engineering: a key component of
systems biology to unravel global abiotic stress cross-talk. Front Plant Sci 3:1–16
Fuentes P, Zhou F, Erban A, Karcher D, Kopka J, Bock R (2016) A new synthetic biology approach
allows transfer of an entire metabolic pathway from a medicinal plant to a biomass crop. elife 5:
e13664
Galanie S, Thodey K, Trenchard IJ, Filsinger Interrante M, Smolke CD (2015) Complete biosynthesis of opioids in yeast. Science 349(6252):1095–1100
Gao J, Zhang T, Xu B, Jia L, Xiao B, Liu H, Liu L, Yan H, Xia Q (2018) CRISPR/Cas9-mediated
mutagenesis of carotenoid cleavage dioxygenase 8 (CCD8) in Tobacco affects shoot and root
architecture. Int J Mol Sci 19(4):1062
Gardner TS, Cantor CR, Collins JJ (2000) Construction of a genetic toggle switch in Escherichia
coli. Nature 403:339–342
Ge H, Li X, Chen S, Zhang M, Liu Z, Wang J et al (2018) The expression of CARK1 or RCAR11
driven by synthetic promoters increases drought tolerance in Arabidopsis thaliana. Int J Mol Sci
19(7):1945
Geddes BA, Ryu MH, Mus F, Costas AG, Peters JW, Voigt CA, Poole P (2015) Use of plant
colonizing bacteria as chassis for transfer of N 2 -fixation to cereals. Curr Opin Biotechnol
32:216–222
Geddes BA, Paramasivan P, Joffrin A, Thompson AL, Christensen K, Jorrin B, Brett P, Conway SJ,
Oldroyd GED, Poole PS (2019) Engineering transkingdom signalling in plants to control gene
expression in rhizosphere bacteria. Nat Commun 10:3430
Gibson DG, Benders GA, Andrews-Pfannkoch C, Denisova EA, Baden-Tillson H, Zaveri J,
Stockwell TB, Brownley A, Thomas DW, Algire MA, Merryman C, Young L, Noskov VN,
Glass JI, Venter JC, Hutchison CA III, Smith HO (2008) Complete chemical synthesis,
assembly, and cloning of a Mycoplasma genitalium genome. Science 319:1215
15 Plant Synthetic Biology: A Paradigm Shift Targeting Stress Mitigation,. . .
477
77:8466–8477
Erb TJ, Zarzycki J (2016) Biochemical and synthetic biology approaches to improve photosynthetic
CO 2 -fixation. Curr Opin Chem Biol 34:72–79
Eudes A, Sathitsuksanoh N, Baidoo EEK, George A, Liang Y, Yang F, Singh S, Keasling JD,
Simmons BA, Loqué D (2015) Expression of a bacterial 3-dehydroshikimate dehydratase
reduces lignin content and improves biomass saccharification efficiency. Plant Biotechnol J
13:1241–1250
Eudes A, Berthomieu R, Hao Z, Zhao N, Benites VT, Baidoo EEK, Loque D (2018) Production of
muconic acid in plants. Metab Eng 46:13–19
Fan J, Yan C, Roston R, Shanklin J, Xu C (2014) Arabidopsis lipins, PDAT1 acyltransferase, and
SDP1 triacylglycerol lipase synergistically direct fatty acids toward β-oxidation, thereby
maintaining membrane lipid homeostasis. Plant Cell 26(10):4119–4134
Fang H, Li D, Kang J, Jiang P, Sun J, Zhang D (2018) Metabolic engineering of Escherichia coli for
de novo biosynthesis of vitamin B12. Nat Commun 9(1):4917
FAO (2017) Nutrition-sensitive agriculture and food systems in practice Options for intervention
Revised edition Food and Agriculture Organization of the United Nations Rome
Farré G, Perez-Fons L, Decourcelle M, Breitenbach J, Hem S, Zhu C, Capell T, Christou C, Fraser
PD, Sandmann G (2016) Metabolic engineering of astaxanthin biosynthesis in maize endosperm
and characterization of a prototype high oil hybrid. Transgenic Res 25:477–489
Ferry MS, Hasty J, Cookson NA (2012) Synthetic biology approaches to biofuel production.
Editorial Biofuels 3(1):9–12
Flores Bueso Y, Tangney M (2017) Synthetic biology in the driving seat of the bioeconomy. Trends
Biotechnol 35(5):373–378
Fossati E, Narcross L, Ekins A, Falgueyret JP, Martin VJ (2015) Synthesis of morphinan alkaloids
in Saccharomyces cerevisiae. PLoS One 10:e0124459
Fowler CC, Brown ED, Li Y (2010) Using a riboswitch sensor to examine coenzyme B(12) metabolism and transport in E. coli. Chem Biol 17(7):756–765
Friedel S, Usadel B, von Wirén N, Sreenivasulu N (2012) Reverse engineering: a key component of
systems biology to unravel global abiotic stress cross-talk. Front Plant Sci 3:1–16
Fuentes P, Zhou F, Erban A, Karcher D, Kopka J, Bock R (2016) A new synthetic biology approach
allows transfer of an entire metabolic pathway from a medicinal plant to a biomass crop. elife 5:
e13664
Galanie S, Thodey K, Trenchard IJ, Filsinger Interrante M, Smolke CD (2015) Complete biosynthesis of opioids in yeast. Science 349(6252):1095–1100
Gao J, Zhang T, Xu B, Jia L, Xiao B, Liu H, Liu L, Yan H, Xia Q (2018) CRISPR/Cas9-mediated
mutagenesis of carotenoid cleavage dioxygenase 8 (CCD8) in Tobacco affects shoot and root
architecture. Int J Mol Sci 19(4):1062
Gardner TS, Cantor CR, Collins JJ (2000) Construction of a genetic toggle switch in Escherichia
coli. Nature 403:339–342
Ge H, Li X, Chen S, Zhang M, Liu Z, Wang J et al (2018) The expression of CARK1 or RCAR11
driven by synthetic promoters increases drought tolerance in Arabidopsis thaliana. Int J Mol Sci
19(7):1945
Geddes BA, Ryu MH, Mus F, Costas AG, Peters JW, Voigt CA, Poole P (2015) Use of plant
colonizing bacteria as chassis for transfer of N 2 -fixation to cereals. Curr Opin Biotechnol
32:216–222
Geddes BA, Paramasivan P, Joffrin A, Thompson AL, Christensen K, Jorrin B, Brett P, Conway SJ,
Oldroyd GED, Poole PS (2019) Engineering transkingdom signalling in plants to control gene
expression in rhizosphere bacteria. Nat Commun 10:3430
Gibson DG, Benders GA, Andrews-Pfannkoch C, Denisova EA, Baden-Tillson H, Zaveri J,
Stockwell TB, Brownley A, Thomas DW, Algire MA, Merryman C, Young L, Noskov VN,
Glass JI, Venter JC, Hutchison CA III, Smith HO (2008) Complete chemical synthesis,
assembly, and cloning of a Mycoplasma genitalium genome. Science 319:1215
15 Plant Synthetic Biology: A Paradigm Shift Targeting Stress Mitigation,. . .
477