(genome-wide association study) has been used to identify genes and QTLs
associated with traits related to agronomic performance, grain quality, abiotic stress
tolerance, and domestication, however, very fewer reports have been published to
date on the use of GWAS for the identification of loci associated with disease
resistance (Kang et al. 2016).
Acknowledgments This work was supported by grants from the Basic Science Research Program
through the National Research Foundation of Korea (NRF) funded by the Ministry of Education,
Science and Technology (NRF-2018R1A4A1025158) provided by STK. RG was supported by the
Ramalingaswami re-entry fellowship (BT/HRD/35/02/2006) from the Department of Biotechnology, Ministry of Science and Technology, Government of India.
References
Akamatsu A, Wong HL, Fujiwara M, Okuda J, Nishide K, Uno K et al (2013) An OsCEBiP/
OsCERK1-OsRacGEF1-OsRac1 module is an essential early component of chitin-induced rice
immunity. Cell Host Microbe 13:465–476
Ashikawa I, Hayashi N, Yamane H, Kanamori H, Wu J, Matsumoto T et al (2008) Two adjacent
nucleotide-binding site–leucine-rich repeat class genes are required to confer Pikm-specific rice
blast resistance. Genetics 180:2267–2276
Ashkani S, Rafii MY, Sariah M, Akmar ASN, Rusli I, Rahim HA et al (2011) Analysis of simple
sequence repeat markers linked with blast disease resistance genes in a segregating population
of rice (Oryza sativa). Genet Mol Res 10:1345–1355
Bigeard J, Colcombet J, Hirt H (2015) Signaling mechanisms in pattern-triggered immunity (PTI).
Mol Plant 8:521–539
Browse J (2009) Jasmonate passes muster: a receptor and targets for the defense hormone. Annu
Rev Plant Biol 60:183–205
Cesari S, Thilliez G, Ribot C, Chalvon V, Michel C, Jauneau A et al (2013) The rice resistance
protein pair RGA4/RGA5 recognizes the Magnaporthe oryzae effectors AVR-Pia and AVR1CO39 by direct binding. Plant Cell 25:1463–1481
Chen L, Hamada S, Fujiwara M, Zhu T, Thao NP, Wong HL et al (2010) The Hop/Sti1-Hsp90
chaperone complex facilitates the maturation and transport of a PAMP receptor in rice innate
immunity. Cell Host Microbe 7:185–196
Chen M, Zeng H, Qiu D, Guo L, Yang X, Shi H et al (2012) Purification and characterization of a
novel hypersensitive response-inducing elicitor from Magnaporthe oryzae that triggers defense
response in rice. PLoS One 7:e37654
Chujo T, Takai R, Akimoto-Tomiyama C, Ando S, Minami E, Nagamura Y et al (2007) Involvement of the elicitor-induced gene OsWRKY53 in the expression of defense-related genes in rice.
Biochim Biophys Acta (BBA)-Gene Struct Exp 1769:497–505
Clay NK, Adio AM, Denoux C, Jander G, Ausubel FM (2009) Glucosinolate metabolites required
for an Arabidopsis innate immune response. Science 323:95–101
Dean RA, Talbot NJ, Ebbole DJ, Farman ML, Mitchell TK, Orbach MJ et al (2005) The genome
sequence of the rice blast fungus Magnaporthe grisea. Nature 434:980–986
Gupta R, Lee SE, Agrawal GK, Rakwal R, Park S, Wang Y et al (2015a) Understanding the plantpathogen interactions in the context of proteomics-generated apoplastic proteins inventory.
Front Plant Sci 6:352
Gupta R, Wang Y, Agrawal GK, Rakwal R, Jo IH, Bang KH et al (2015b) Time to dig deep into the
plant proteome: a hunt for low-abundance proteins. Front Plant Sci 6:1–3. https://doi.org/10.
3389/fpls.2015.00022
374
N. Khatri et al.
associated with traits related to agronomic performance, grain quality, abiotic stress
tolerance, and domestication, however, very fewer reports have been published to
date on the use of GWAS for the identification of loci associated with disease
resistance (Kang et al. 2016).
Acknowledgments This work was supported by grants from the Basic Science Research Program
through the National Research Foundation of Korea (NRF) funded by the Ministry of Education,
Science and Technology (NRF-2018R1A4A1025158) provided by STK. RG was supported by the
Ramalingaswami re-entry fellowship (BT/HRD/35/02/2006) from the Department of Biotechnology, Ministry of Science and Technology, Government of India.
References
Akamatsu A, Wong HL, Fujiwara M, Okuda J, Nishide K, Uno K et al (2013) An OsCEBiP/
OsCERK1-OsRacGEF1-OsRac1 module is an essential early component of chitin-induced rice
immunity. Cell Host Microbe 13:465–476
Ashikawa I, Hayashi N, Yamane H, Kanamori H, Wu J, Matsumoto T et al (2008) Two adjacent
nucleotide-binding site–leucine-rich repeat class genes are required to confer Pikm-specific rice
blast resistance. Genetics 180:2267–2276
Ashkani S, Rafii MY, Sariah M, Akmar ASN, Rusli I, Rahim HA et al (2011) Analysis of simple
sequence repeat markers linked with blast disease resistance genes in a segregating population
of rice (Oryza sativa). Genet Mol Res 10:1345–1355
Bigeard J, Colcombet J, Hirt H (2015) Signaling mechanisms in pattern-triggered immunity (PTI).
Mol Plant 8:521–539
Browse J (2009) Jasmonate passes muster: a receptor and targets for the defense hormone. Annu
Rev Plant Biol 60:183–205
Cesari S, Thilliez G, Ribot C, Chalvon V, Michel C, Jauneau A et al (2013) The rice resistance
protein pair RGA4/RGA5 recognizes the Magnaporthe oryzae effectors AVR-Pia and AVR1CO39 by direct binding. Plant Cell 25:1463–1481
Chen L, Hamada S, Fujiwara M, Zhu T, Thao NP, Wong HL et al (2010) The Hop/Sti1-Hsp90
chaperone complex facilitates the maturation and transport of a PAMP receptor in rice innate
immunity. Cell Host Microbe 7:185–196
Chen M, Zeng H, Qiu D, Guo L, Yang X, Shi H et al (2012) Purification and characterization of a
novel hypersensitive response-inducing elicitor from Magnaporthe oryzae that triggers defense
response in rice. PLoS One 7:e37654
Chujo T, Takai R, Akimoto-Tomiyama C, Ando S, Minami E, Nagamura Y et al (2007) Involvement of the elicitor-induced gene OsWRKY53 in the expression of defense-related genes in rice.
Biochim Biophys Acta (BBA)-Gene Struct Exp 1769:497–505
Clay NK, Adio AM, Denoux C, Jander G, Ausubel FM (2009) Glucosinolate metabolites required
for an Arabidopsis innate immune response. Science 323:95–101
Dean RA, Talbot NJ, Ebbole DJ, Farman ML, Mitchell TK, Orbach MJ et al (2005) The genome
sequence of the rice blast fungus Magnaporthe grisea. Nature 434:980–986
Gupta R, Lee SE, Agrawal GK, Rakwal R, Park S, Wang Y et al (2015a) Understanding the plantpathogen interactions in the context of proteomics-generated apoplastic proteins inventory.
Front Plant Sci 6:352
Gupta R, Wang Y, Agrawal GK, Rakwal R, Jo IH, Bang KH et al (2015b) Time to dig deep into the
plant proteome: a hunt for low-abundance proteins. Front Plant Sci 6:1–3. https://doi.org/10.
3389/fpls.2015.00022
374
N. Khatri et al.