Huang SQ, Xiang AL, Che LL, Chen S, Li H, Song JB, Yang ZM (2010) A set of miRNAs from
Brassica napus in response to sulphate deficiency and cadmium stress. Plant Biotechnol J 8
(8):887–899
Huang CY, Shirley N, Genc Y, Shi B, Langridge P (2011) Phosphate utilization efficiency
correlates with expression of low-affinity phosphate transporters and noncoding RNA, IPS1,
in barley. Plant Physiol 156(3):1217–1229
Huang X, Feng J, Wang R, Zhang H, Huang J (2019) Comparative analysis of microRNAs and their
targets in the roots of two cultivars with contrasting salt tolerance in rice (Oryza sativa L.). Plant
Growth Regul 87(1):139–148
Iwamoto M, Tagiri A (2016) MicroRNA-targeted transcription factor gene RDD1 promotes
nutrient ion uptake and accumulation in rice. Plant J 85:466–477
Jagadeeswaran G, Li YF, Sunkar R (2014) Redox signaling mediates the expression of a sulfate
deprivation-inducible microRNA395 in Arabidopsis. Plant J 77:85–96
Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ (2011) Massive analysis
of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage. Plant Cell 23:4185–4207
Jiang D, Zhou L, Chen W, Ye N, Xia J, Zhuang C (2019) Overexpression of a microRNA-targeted
NAC transcription factor improves drought and salt tolerance in Rice via ABA-mediated
pathways. Rice 12(1):76
Jones-Rhoades MW, Bartel DP (2004) Computational identification of plant microRNAs and their
targets, including a stress-induced miRNA. Mol Cell 14:787–799
Jones-Rhoades MW, Barte DP, Bartel B (2006) MicroRNAs and their regulatory roles in plants.
Annu Rev Plant Biol 57:19–53
Josine TL, Ji J, Wang G, Guan CF (2011) Advances in genetic engineering for plants abiotic stress
control. Afr J Biotechnol 10:5402–5413
Jung HI, Gayomba SR, Rutzke MA, Craft E, Kochian LV, Vatamaniuk OK (2012) COPT6 is a
plasma membrane transporter that functions in copper homeostasis in Arabidopsis and is a novel
target of SQUAMOSA promoter-binding protein-like 7. J Biol Chem 287(40):33252–33267
Kant S, Peng M, Rothstein SJ (2011) Genetic regulation by NLA and microRNA827 for
maintaining nitrate-dependent phosphate homeostasis in Arabidopsis. PLoS Genet 7:e1002021
Kawashima CG, Matthewman CA, Huang S, Lee BR, Yoshimoto N, Koprivova A, Rubio-SomozaI, Todesco M, Rathjen T, Saito K, Takahashi H (2011) Interplay of SLIM1and miR395 in the
regulation of sulfate assimilation in Arabidopsis. Plant J 66:863–876
Kim S, Yang JY, Xu J, Jang IC, Prigge MJ, Chua NH (2008) Two cap-binding proteins CBP20 and
CBP80 are involved in processing primary microRNAs. Plant Cell Physiol 49:1634–1644
Kim YJ, Zheng B, Yu Y, Won SY, Mo B, Chen X (2011) The role of mediator in small and long
noncoding RNA production in Arabidopsis thaliana. EMBO J 30:814–822
Kinoshita N, Wang H, Kasahara H, Liu J, MacPherson C, Machida Y, Kamiya Y, Hannah MA,
Chua NH (2012) IAA-Ala Resistant3, an evolutionarily conserved target of miR167, mediates
Arabidopsis root architecture changes during high osmotic stress. Plant Cell 24:3590–3602
Kong X, Zhang M, Xu X, Li X, Li C, Ding Z (2014) System analysis of microRNAs in the
development and aluminium stress responses of the maize root system. Plant Biotechnol J
12:1108–1121
Kotak S, Vierling E, Bäumlein H, von Koskull-Döring P (2007) A novel transcriptional cascade
regulating expression of heat stress proteins during seed development of Arabidopsis. Plant Cell
19(1):182–195
Kraiser T, Gras DE, Gutiérrez AG, González B, Gutiérrez RA (2011) A holistic view of nitrogen
acquisition in plants. J Exp Bot 62(4):1455–1466
Kropat J, Tottey S, Birkenbihl RP, Depege N, Huijser P, Merchant S (2005) A regulator of
nutritional copper signaling in Chlamydomonas is an SBP domain protein that recognizes the
GTAC core of copper response element. Proc Natl Acad Sci 102(51):18730–18735
8 Orchestration of MicroRNAs and Transcription Factors in the Regulation of Plant. . .
271
Brassica napus in response to sulphate deficiency and cadmium stress. Plant Biotechnol J 8
(8):887–899
Huang CY, Shirley N, Genc Y, Shi B, Langridge P (2011) Phosphate utilization efficiency
correlates with expression of low-affinity phosphate transporters and noncoding RNA, IPS1,
in barley. Plant Physiol 156(3):1217–1229
Huang X, Feng J, Wang R, Zhang H, Huang J (2019) Comparative analysis of microRNAs and their
targets in the roots of two cultivars with contrasting salt tolerance in rice (Oryza sativa L.). Plant
Growth Regul 87(1):139–148
Iwamoto M, Tagiri A (2016) MicroRNA-targeted transcription factor gene RDD1 promotes
nutrient ion uptake and accumulation in rice. Plant J 85:466–477
Jagadeeswaran G, Li YF, Sunkar R (2014) Redox signaling mediates the expression of a sulfate
deprivation-inducible microRNA395 in Arabidopsis. Plant J 77:85–96
Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ (2011) Massive analysis
of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage. Plant Cell 23:4185–4207
Jiang D, Zhou L, Chen W, Ye N, Xia J, Zhuang C (2019) Overexpression of a microRNA-targeted
NAC transcription factor improves drought and salt tolerance in Rice via ABA-mediated
pathways. Rice 12(1):76
Jones-Rhoades MW, Bartel DP (2004) Computational identification of plant microRNAs and their
targets, including a stress-induced miRNA. Mol Cell 14:787–799
Jones-Rhoades MW, Barte DP, Bartel B (2006) MicroRNAs and their regulatory roles in plants.
Annu Rev Plant Biol 57:19–53
Josine TL, Ji J, Wang G, Guan CF (2011) Advances in genetic engineering for plants abiotic stress
control. Afr J Biotechnol 10:5402–5413
Jung HI, Gayomba SR, Rutzke MA, Craft E, Kochian LV, Vatamaniuk OK (2012) COPT6 is a
plasma membrane transporter that functions in copper homeostasis in Arabidopsis and is a novel
target of SQUAMOSA promoter-binding protein-like 7. J Biol Chem 287(40):33252–33267
Kant S, Peng M, Rothstein SJ (2011) Genetic regulation by NLA and microRNA827 for
maintaining nitrate-dependent phosphate homeostasis in Arabidopsis. PLoS Genet 7:e1002021
Kawashima CG, Matthewman CA, Huang S, Lee BR, Yoshimoto N, Koprivova A, Rubio-SomozaI, Todesco M, Rathjen T, Saito K, Takahashi H (2011) Interplay of SLIM1and miR395 in the
regulation of sulfate assimilation in Arabidopsis. Plant J 66:863–876
Kim S, Yang JY, Xu J, Jang IC, Prigge MJ, Chua NH (2008) Two cap-binding proteins CBP20 and
CBP80 are involved in processing primary microRNAs. Plant Cell Physiol 49:1634–1644
Kim YJ, Zheng B, Yu Y, Won SY, Mo B, Chen X (2011) The role of mediator in small and long
noncoding RNA production in Arabidopsis thaliana. EMBO J 30:814–822
Kinoshita N, Wang H, Kasahara H, Liu J, MacPherson C, Machida Y, Kamiya Y, Hannah MA,
Chua NH (2012) IAA-Ala Resistant3, an evolutionarily conserved target of miR167, mediates
Arabidopsis root architecture changes during high osmotic stress. Plant Cell 24:3590–3602
Kong X, Zhang M, Xu X, Li X, Li C, Ding Z (2014) System analysis of microRNAs in the
development and aluminium stress responses of the maize root system. Plant Biotechnol J
12:1108–1121
Kotak S, Vierling E, Bäumlein H, von Koskull-Döring P (2007) A novel transcriptional cascade
regulating expression of heat stress proteins during seed development of Arabidopsis. Plant Cell
19(1):182–195
Kraiser T, Gras DE, Gutiérrez AG, González B, Gutiérrez RA (2011) A holistic view of nitrogen
acquisition in plants. J Exp Bot 62(4):1455–1466
Kropat J, Tottey S, Birkenbihl RP, Depege N, Huijser P, Merchant S (2005) A regulator of
nutritional copper signaling in Chlamydomonas is an SBP domain protein that recognizes the
GTAC core of copper response element. Proc Natl Acad Sci 102(51):18730–18735
8 Orchestration of MicroRNAs and Transcription Factors in the Regulation of Plant. . .
271