Benková E, Ivanchenko MG, Friml J, Shishkova S, Dubrovsky JG (2009) A morphogenetic trigger:
is there an emerging concept in plant developmental biology? Trends Plant Sci 14:189–193
Bielach A, Hrtyan M, Tognetti VB (2017) Plants under stress: involvement of auxin and cytokinin.
Int J Mol Sci 4(18):7
Biłas R, Szafran K, Hnatuszko-Konka K, Kononowicz AK (2016) Cis-regulatory elements used to
control gene expression in plants. Plant Cell Tissue Organ Cult 127(2):269–287
Branscheid A, Sieh D, Pant BD, May P, Devers EA, Elkrog A, Schauser L, Scheible WR, Krajinski
F (2010) Expression pattern suggests a role of MiR399 in the regulation of the cellular response
to local Pi increase during arbuscular mycorrhizal symbiosis. Mol Plant-Microbe Interact
23:915–926
Brousse C, Liu Q, Beauclair L, Deremetz A, Axtell MJ, Bouche N (2014) A non-canonical plant
microRNA target site. Nucleic Acids Res 42(8):5270–5279
Burkhead JL, Gogolin Reynolds KA, Abdel-Ghany SE, Cohu CM, Pilon M (2009) Copper
homeostasis. New Phytol 182(4):799–816
Bustos R, Castrillo G, Linhares F, Puga MI, Rubio V, Pérez-Pérez J, Solano R, Leyva A, Paz-Ares J
(2010) A central regulatory system largely controls transcriptional activation and repression
responses to phosphate starvation in Arabidopsis. PLoS Genet 6:e1001102
Cao X, Wu Z, Jiang F, Zhou R, Yang Z (2014) Identification of chilling stress-responsive tomato
microRNAs and their target genes by high-throughput sequencing and degradome analysis.
BMC Genomics 15(1):1–16
Carr HS, Winge DR (2003) Assembly of cytochrome c oxidase within the mitochondrion. Acc
Chem Res 36(5):309–316
Casadevall R, Rodriguez RE, Debernardi JM, Palatnik JF, Casati P (2013) Repression of growth
regulating factors by the microRNA396 inhibits cell proliferation by UV-B radiation in
Arabidopsis leaves. Plant Cell 25:3570–3583
Chen Q, Li M, Zhang Z, Tie W, Chen X, Jin L, Zhai N, Zheng Q, Zhang J, Wang R, Xu G (2017)
Integrated mRNA and microRNA analysis identifies genes and small miRNA molecules
associated with transcriptional and post-transcriptional-level responses to both drought stress
and re-watering treatment in tobacco. BMC Genomics 18(1):62
Cheng HY, Wang Y, Tao X, Fan YF, Dai Y, Yang H, Ma XR (2016) Genomic profiling of
exogenous abscisic acid-responsive microRNAs in tomato (Solanum lycopersicum). BMC
Genomics 17(1):423
Chinnusamy V, Zhu JK, Sunkar R (2010) Gene regulation during cold stress acclimation in plants.
In: Plant stress tolerance. Humana press, pp 39–55
Chiou TJ, Aung K, Lin SI, Wu CC, Chiang SF, Su CL (2006) Regulation of phosphate homeostasis
by microRNA in Arabidopsis. Plant Cell 18:412–421
Contreras-Cubas C, Palomar M, Arteaga-Vázquez M, Reyes JL, Covarrubias AA (2012)
Non-coding RNAs in the plant response to abiotic stress. Planta 236(4):943–958
Dai X, Wang Y, Yang A, Zhang WH (2012) OsMYB2P-1, an R2R3 MYB transcription factor, is
involved in the regulation of phosphate-starvation responses and root architecture in rice. Plant
Physiol 159(1):169–183
Dai X, Wang Y, Zhang WH (2016) OsWRKY74, a WRKY transcription factor, modulates
tolerance to phosphate starvation in rice. J Exp Bot 67(3):947–960
Ding D, Zhang L, Wang H, Liu Z, Zhang Z, Zheng Y (2009) Differential expression of miRNAs in
response to salt stress in maize roots. Ann Bot 103(1):29–38
Ding Q, Zeng J, He XQ (2016) MiR169 and its target PagHAP2-6 regulated by ABA are involved
in poplar cambium dormancy. J Plant Physiol 198:1–9
Ding Y, Gong S, Wang Y, Wang F, Bao H, Sun J, Cai C, Yi K, Chen Z, Zhu C (2018)
MicroRNA166 modulates cadmium tolerance and accumulation in rice. Plant Physiol 177
(4):1691–1703
Dong CH, Pei H (2014) Over-expression of miR397 improves plant tolerance to cold stress in
Arabidopsis thaliana. J Plant Biol 57:209–217
8 Orchestration of MicroRNAs and Transcription Factors in the Regulation of Plant. . .
269
is there an emerging concept in plant developmental biology? Trends Plant Sci 14:189–193
Bielach A, Hrtyan M, Tognetti VB (2017) Plants under stress: involvement of auxin and cytokinin.
Int J Mol Sci 4(18):7
Biłas R, Szafran K, Hnatuszko-Konka K, Kononowicz AK (2016) Cis-regulatory elements used to
control gene expression in plants. Plant Cell Tissue Organ Cult 127(2):269–287
Branscheid A, Sieh D, Pant BD, May P, Devers EA, Elkrog A, Schauser L, Scheible WR, Krajinski
F (2010) Expression pattern suggests a role of MiR399 in the regulation of the cellular response
to local Pi increase during arbuscular mycorrhizal symbiosis. Mol Plant-Microbe Interact
23:915–926
Brousse C, Liu Q, Beauclair L, Deremetz A, Axtell MJ, Bouche N (2014) A non-canonical plant
microRNA target site. Nucleic Acids Res 42(8):5270–5279
Burkhead JL, Gogolin Reynolds KA, Abdel-Ghany SE, Cohu CM, Pilon M (2009) Copper
homeostasis. New Phytol 182(4):799–816
Bustos R, Castrillo G, Linhares F, Puga MI, Rubio V, Pérez-Pérez J, Solano R, Leyva A, Paz-Ares J
(2010) A central regulatory system largely controls transcriptional activation and repression
responses to phosphate starvation in Arabidopsis. PLoS Genet 6:e1001102
Cao X, Wu Z, Jiang F, Zhou R, Yang Z (2014) Identification of chilling stress-responsive tomato
microRNAs and their target genes by high-throughput sequencing and degradome analysis.
BMC Genomics 15(1):1–16
Carr HS, Winge DR (2003) Assembly of cytochrome c oxidase within the mitochondrion. Acc
Chem Res 36(5):309–316
Casadevall R, Rodriguez RE, Debernardi JM, Palatnik JF, Casati P (2013) Repression of growth
regulating factors by the microRNA396 inhibits cell proliferation by UV-B radiation in
Arabidopsis leaves. Plant Cell 25:3570–3583
Chen Q, Li M, Zhang Z, Tie W, Chen X, Jin L, Zhai N, Zheng Q, Zhang J, Wang R, Xu G (2017)
Integrated mRNA and microRNA analysis identifies genes and small miRNA molecules
associated with transcriptional and post-transcriptional-level responses to both drought stress
and re-watering treatment in tobacco. BMC Genomics 18(1):62
Cheng HY, Wang Y, Tao X, Fan YF, Dai Y, Yang H, Ma XR (2016) Genomic profiling of
exogenous abscisic acid-responsive microRNAs in tomato (Solanum lycopersicum). BMC
Genomics 17(1):423
Chinnusamy V, Zhu JK, Sunkar R (2010) Gene regulation during cold stress acclimation in plants.
In: Plant stress tolerance. Humana press, pp 39–55
Chiou TJ, Aung K, Lin SI, Wu CC, Chiang SF, Su CL (2006) Regulation of phosphate homeostasis
by microRNA in Arabidopsis. Plant Cell 18:412–421
Contreras-Cubas C, Palomar M, Arteaga-Vázquez M, Reyes JL, Covarrubias AA (2012)
Non-coding RNAs in the plant response to abiotic stress. Planta 236(4):943–958
Dai X, Wang Y, Yang A, Zhang WH (2012) OsMYB2P-1, an R2R3 MYB transcription factor, is
involved in the regulation of phosphate-starvation responses and root architecture in rice. Plant
Physiol 159(1):169–183
Dai X, Wang Y, Zhang WH (2016) OsWRKY74, a WRKY transcription factor, modulates
tolerance to phosphate starvation in rice. J Exp Bot 67(3):947–960
Ding D, Zhang L, Wang H, Liu Z, Zhang Z, Zheng Y (2009) Differential expression of miRNAs in
response to salt stress in maize roots. Ann Bot 103(1):29–38
Ding Q, Zeng J, He XQ (2016) MiR169 and its target PagHAP2-6 regulated by ABA are involved
in poplar cambium dormancy. J Plant Physiol 198:1–9
Ding Y, Gong S, Wang Y, Wang F, Bao H, Sun J, Cai C, Yi K, Chen Z, Zhu C (2018)
MicroRNA166 modulates cadmium tolerance and accumulation in rice. Plant Physiol 177
(4):1691–1703
Dong CH, Pei H (2014) Over-expression of miR397 improves plant tolerance to cold stress in
Arabidopsis thaliana. J Plant Biol 57:209–217
8 Orchestration of MicroRNAs and Transcription Factors in the Regulation of Plant. . .
269