180
C. C. V. Velloso et al.
Thomas P, Kumari S, Swarna GK, Prakash DP, Dinesh MR (2007) Ubiquitous presence of fastidious
endophytic bacteria in field shoots and index-negative apparently clean shoot-tip cultures of
papaya. Plant Cell Rep 26:1491–1499. https://doi.org/10.1007/s00299-007-0363-2
Tiwari S, Prasad V, Lata C (2019) Bacillus: Plant growth promoting bacteria for sustainable agriculture and environment. In: New and future developments in microbial biotechnology and
bioengineering, Elsevier, pp 43–55. https://doi.org/10.1016/b978-0-444-64191-5.00003-1
Upadhyay J, Joshi R, Singh B et al (2017) Application of bioinformatics in understanding of plant
stress tolerance. In: Hakeem K, Malik A, Vardar-Sukan F, Ozturk M (eds) Plant Bioinformatics,
Springer, Cham, pp 347–374. https://doi.org/10.1007/978-3-319-67156-7_14
Varma PK, Uppala S, Pavuluri K, Chandra KJ, Chapala MM, Kumar KVK (2017) Endophytes: role
and functions in crop health. In: Singh D, Singh H, Prabha R (eds) Plant-microbe interactions
in agro-ecological perspectives. Springer, Singapore, pp 291–310. https://doi.org/10.1007/978981-10-6593-4
Vega NOW (2007) A review on beneficial effects of rhizosphere bacteria on soil nutrient availability
and plant nutrient uptake. Rev Fac Nac Agron Medellin 60:3621–3643. https://doi.org/10.1007/
s40011-013-0297-0
Vieira Velloso CC, de Oliveira CA, Gomes EA, Lana UGP, de Carvalho CG, Guimarães LJM,
Pastina MM, de Sousa SM, (2020) Genome-guided insights of tropical Bacillus strains efficient
in maize growth promotion. FEMS Microbiology Ecology 96(9)
Walker V, Bertrand C, Bellvert F, Moënne-Loccoz Y, René B, Comte G (2011) Host plant secondary
metabolite profiling shows a complex, strain-dependent response of maize to plant growthpromoting rhizobacteria of the genus Azospirillum. New Phytol 189:494–506. https://doi.org/
10.1111/j.1469-8137.2010.03484.x
Wallace JG, May G (2018) Endophytes: the other Maize Genome. In: Bennetzen J, Flint-Garcia S,
Hirsch C, Tuberosa R (eds) The Maize genome. compendium of plant genomes. Springer, Cham,
pp 213–246. https://doi.org/10.1007/978-3-319-97427-9_14
Wang TT, Ding P, Chen P et al (2017) Complete genome sequence of endophyte Bacillus flexus
KLBMP 4941 reveals its plant growth promotion mechanism and genetic basis for salt tolerance.
J Biotechnol 260:38–41. https://doi.org/10.1016/j.jbiotec.2017.09.001
Wemheuer F, Hollensteiner J, Poehlein A, Liesegang H, Daniel R, Wemheuer B (2018) Draft genome
sequence of the endophyte Bacillus mycoides strain GM6LP isolated from Lolium perenne.
Genome Announc 6:e00011–18. https://doi.org/10.1128/genomeA.00011-18
Xia Y, DeBolt S, Dreyer J, Scott D, Williams MA (2015) Characterization of culturable bacterial
endophytes and their capacity to promote plant growth from plants grown using organic or
conventional practices. Front Plant Sci 6:490. https://doi.org/10.3389/fpls.2015.00490
Yaish MW (2017) Draft genome sequence of the endophytic Bacillus aryabhattai strain SQU-R12,
identified from Phoenix dactylifera L. roots. Genome Announc 5:e00718–17. https://doi.org/10.
1128/genomeA.00718-17
Yi Y, de Jong A, Spoelder J, Elzenga JTM, van Elsas JD, Kuipers OP (2016) Draft genome sequence
of Bacillus mycoides M2E15, a strain isolated from the endosphere of potato. Genome Announc
4:e00031–16. https://doi.org/10.1128/genomeA.00031-16
Yuan M, He H, Xiao L, Zhong T, Liu H, Li S, Deng P, Ye Z, Jing Y (2014) Enhancement of Cd
phytoextraction by two Amaranthus species with endophytic Rahnella sp. JN27. Chemosphere
103:99–104. https://doi.org/10.1016/j.chemosphere.2013.11.040
Zhang N, Yang D, Kendall JR et al (2016) Comparative genomic analysis of Bacillus amyloliquefaciens and Bacillus subtilis reveals evolutional traits for adaptation to plant-associated habitats.
Front Microbiol 7:2039. https://doi.org/10.3389/fmicb.2016.02039
Zinniel DK, Lambrecht P, Harris NB, Feng Z, Kuczmarski D, Higley P (2002) Ishimaru CA (2002)
Isolation and characterization of endophytic colonizing bacteria from agronomic crops and prairie
plants. Appl Environ Microbiol 68:2198–2208. https://doi.org/10.1128/AEM.68.5.2198-2208
C. C. V. Velloso et al.
Thomas P, Kumari S, Swarna GK, Prakash DP, Dinesh MR (2007) Ubiquitous presence of fastidious
endophytic bacteria in field shoots and index-negative apparently clean shoot-tip cultures of
papaya. Plant Cell Rep 26:1491–1499. https://doi.org/10.1007/s00299-007-0363-2
Tiwari S, Prasad V, Lata C (2019) Bacillus: Plant growth promoting bacteria for sustainable agriculture and environment. In: New and future developments in microbial biotechnology and
bioengineering, Elsevier, pp 43–55. https://doi.org/10.1016/b978-0-444-64191-5.00003-1
Upadhyay J, Joshi R, Singh B et al (2017) Application of bioinformatics in understanding of plant
stress tolerance. In: Hakeem K, Malik A, Vardar-Sukan F, Ozturk M (eds) Plant Bioinformatics,
Springer, Cham, pp 347–374. https://doi.org/10.1007/978-3-319-67156-7_14
Varma PK, Uppala S, Pavuluri K, Chandra KJ, Chapala MM, Kumar KVK (2017) Endophytes: role
and functions in crop health. In: Singh D, Singh H, Prabha R (eds) Plant-microbe interactions
in agro-ecological perspectives. Springer, Singapore, pp 291–310. https://doi.org/10.1007/978981-10-6593-4
Vega NOW (2007) A review on beneficial effects of rhizosphere bacteria on soil nutrient availability
and plant nutrient uptake. Rev Fac Nac Agron Medellin 60:3621–3643. https://doi.org/10.1007/
s40011-013-0297-0
Vieira Velloso CC, de Oliveira CA, Gomes EA, Lana UGP, de Carvalho CG, Guimarães LJM,
Pastina MM, de Sousa SM, (2020) Genome-guided insights of tropical Bacillus strains efficient
in maize growth promotion. FEMS Microbiology Ecology 96(9)
Walker V, Bertrand C, Bellvert F, Moënne-Loccoz Y, René B, Comte G (2011) Host plant secondary
metabolite profiling shows a complex, strain-dependent response of maize to plant growthpromoting rhizobacteria of the genus Azospirillum. New Phytol 189:494–506. https://doi.org/
10.1111/j.1469-8137.2010.03484.x
Wallace JG, May G (2018) Endophytes: the other Maize Genome. In: Bennetzen J, Flint-Garcia S,
Hirsch C, Tuberosa R (eds) The Maize genome. compendium of plant genomes. Springer, Cham,
pp 213–246. https://doi.org/10.1007/978-3-319-97427-9_14
Wang TT, Ding P, Chen P et al (2017) Complete genome sequence of endophyte Bacillus flexus
KLBMP 4941 reveals its plant growth promotion mechanism and genetic basis for salt tolerance.
J Biotechnol 260:38–41. https://doi.org/10.1016/j.jbiotec.2017.09.001
Wemheuer F, Hollensteiner J, Poehlein A, Liesegang H, Daniel R, Wemheuer B (2018) Draft genome
sequence of the endophyte Bacillus mycoides strain GM6LP isolated from Lolium perenne.
Genome Announc 6:e00011–18. https://doi.org/10.1128/genomeA.00011-18
Xia Y, DeBolt S, Dreyer J, Scott D, Williams MA (2015) Characterization of culturable bacterial
endophytes and their capacity to promote plant growth from plants grown using organic or
conventional practices. Front Plant Sci 6:490. https://doi.org/10.3389/fpls.2015.00490
Yaish MW (2017) Draft genome sequence of the endophytic Bacillus aryabhattai strain SQU-R12,
identified from Phoenix dactylifera L. roots. Genome Announc 5:e00718–17. https://doi.org/10.
1128/genomeA.00718-17
Yi Y, de Jong A, Spoelder J, Elzenga JTM, van Elsas JD, Kuipers OP (2016) Draft genome sequence
of Bacillus mycoides M2E15, a strain isolated from the endosphere of potato. Genome Announc
4:e00031–16. https://doi.org/10.1128/genomeA.00031-16
Yuan M, He H, Xiao L, Zhong T, Liu H, Li S, Deng P, Ye Z, Jing Y (2014) Enhancement of Cd
phytoextraction by two Amaranthus species with endophytic Rahnella sp. JN27. Chemosphere
103:99–104. https://doi.org/10.1016/j.chemosphere.2013.11.040
Zhang N, Yang D, Kendall JR et al (2016) Comparative genomic analysis of Bacillus amyloliquefaciens and Bacillus subtilis reveals evolutional traits for adaptation to plant-associated habitats.
Front Microbiol 7:2039. https://doi.org/10.3389/fmicb.2016.02039
Zinniel DK, Lambrecht P, Harris NB, Feng Z, Kuczmarski D, Higley P (2002) Ishimaru CA (2002)
Isolation and characterization of endophytic colonizing bacteria from agronomic crops and prairie
plants. Appl Environ Microbiol 68:2198–2208. https://doi.org/10.1128/AEM.68.5.2198-2208