Table 3
List of genomes in GenBank for type strains. Genomes are organized according to the most recent
taxonomic organization; previous names (basonyms) are also provided. Genus type species are
shown in bold and capital letters. For taxa with no available type strain genome, a nontype strain
genome is provided. For taxa that have been reclassified such that they no longer have independent
standing (e.g., M. bovis and M. bouchedurhonense), the genomes of the basonym’s type strain are
provided and indicated with an asterisk. {No type strain is designated due to difficulties in culturing
in vitro
Name
Basonym
TS genome
Non-TS
genome
MYCOBACTERIUM
TUBERCULOSIS
MYCOBACTERIUM
TUBERCULOSIS
AL123456.3 –
Mycobacterium tuberculosis variant
africanum
Mycobacterium africanum
–
MWXF01*
Mycobacterium tuberculosis variant bovis Mycobacterium bovis
–
MWXE01*
Mycobacterium tuberculosis variant caprae Mycobacterium caprae
–
MWXD01*
Mycobacterium tuberculosis variant
microti
Mycobacterium microti
–
MWXC01*
Mycobacterium tuberculosis variant
pinnipedii
Mycobacterium pinnipedii
–
MWXB01*
Mycobacterium alsense
–
MVHD01
–
Mycobacterium angelicum
–
MVHE01
–
Mycobacterium aquaticum
–
MVHF01
–
Mycobacterium aquiterrae
–
–
–
Mycobacterium arosiense
–
MVHG01
–
Mycobacterium asiaticum
–
CCBD01
–
Mycobacterium attenuatum
–
UPHT01
–
Mycobacterium avium subsp. avium
–
CP046507.1 –
Mycobacterium avium subsp. avium
Mycobacterium
bouchedurhonense
–
MVHL01*
Mycobacterium avium subsp.
paratuberculosis
–
AGAR01
–
Mycobacterium avium subsp. silvaticum –
AYOC01
–
Mycobacterium basiliense
–
LR130759.1 –
Mycobacterium bohemicum
–
CSTD01
–
Mycobacterium botniense
–
BLKW01
–
Mycobacterium bourgelatii
–
BLKZ01
–
Mycobacterium branderi
–
AP022606.1 –
Mycobacterium celatum
–
LQOM01
–
(continued)
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Marco A. Riojas et al.