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342
Eachan O. Johnson and Deborah T. Hung
python framework to work with highthroughput sequencing data. Bioinformatics
31(2):166–169
15. Zhao L et al (2017) Bartender: a fast and accurate clustering algorithm to count barcode
reads. Bioinformatics 34(5):739–747
16. Friedman J, Hastie T, Tibshirani R (2010)
Regularization paths for generalized linear
models via coordinate descent. J Stat Softw 33
(1):1–22
17. Wishart DS et al (2008) DrugBank: a knowledge base for drugs, drug actions and drug
targets. Nucleic Acids Res 36(suppl_1):
D901–D906
18. Wheeler DL et al (2006) Database resources of
the National Center for Biotechnology Information. Nucleic Acids Res 34(suppl_1):
D7–D19
19. Subramanian A et al (2005) Gene set enrichment analysis: a knowledge-based approach for
interpreting genome-wide expression profiles.
Proc Natl Acad Sci U S A 102
(43):15545–15550
20. Kanehisa M et al (2017) KEGG: new perspectives on genomes, pathways, diseases and
drugs. Nucleic Acids Res 45(D1):D353–D361
342
Eachan O. Johnson and Deborah T. Hung