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2018b;1865:195–215. doi: 10.1007/978-1-4939-8784-9_14.
PMID: 30151768; PMCID: PMC6534117.
Sonnett M, Yeung E, Wühr M. Accurate, sensitive, and precise
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cluster. Anal Chem. 2018a Apr 17;90(8):5032–5039. doi: 10.
1021/acs.analchem.7b04713. PMID: 29522331; PMCID: PMC
6220677.
Sun L, Dubiak KM, Peuchen EH, Zhang Z, Zhu G, Huber PW,
Dovichi NJ. Single cell proteomics using frog ( Xenopus laevis)
blastomeres isolated from early stage embryos, which form
a geometric progression in protein content. Anal Chem. 2016
Jul 5;88(13):6653–6657. doi: 10.1021/acs.analchem.6b01921.
PMID: 27314579; PMCID: PMC4940028.
Verbruggen S, Ndah E, Van Criekinge W, Gessulat S, Kuster B,
Wilhelm M, Van Damme P, Menschaert G. PROTEOFORMER
2.0: Further developments in the ribosome prof lingassisted proteogenomic hunt for new proteoforms. Mol
Cell Proteo mics. 2019 Aug 9;18(8 suppl 1):S126–S140.
doi: 10.1074/mcp.RA118.001218. PMID: 31040227; PMCID:
PMC6692777.
Wühr M, Freeman RM Jr, Presler M, Horb ME, Peshkin L, Gygi S,
Kirschner MW. Deep proteomics of the Xenopus laevis egg
using an mRNA-derived reference database. Curr Biol. 2014
Jul 7;24(13):1467–1475. doi: 10.1016/j.cub.2014.05.044.
PMID: 24954049; PMCID: PMC4090281.
Wühr M, Güttler T, Peshkin L, McAlister GC, Sonnett M, Ishihara K,
Groen AC, Presler M, Erickson BK, Mitchison TJ, Kirschner
MW, Gygi SP. The nuclear proteome of a vertebrate. Curr Biol.
2015 Oct 19;25(20):2663–2671. doi: 10.1016/j.cub.2015.08.
047. PMID: 26441354; PMCID: PMC4618192.
Zhao J, Qin B, Nikolay R, Spahn CMT, Zhang G. Translatomics:
The global view of translation. Int J Mol Sci. 2019 Jan
8;20(1):212. doi: 10.3390/ijms20010212. PMID: 30626072;
PMCID: PMC6337585.
Xenopus
Nucleic Acids Res. 2014 Sep;42(15):9880–9891. doi: 10.1093/
nar/gku661. PMID: 25056316; PMCID: PMC4150773.
Sonnett M, Gupta M, Nguyen T, Wühr M. Quantitative proteomics
for Xenopus embryos II, data analysis. Methods Mol Biol.
2018b;1865:195–215. doi: 10.1007/978-1-4939-8784-9_14.
PMID: 30151768; PMCID: PMC6534117.
Sonnett M, Yeung E, Wühr M. Accurate, sensitive, and precise
multiplexed proteomics using the complement reporter ion
cluster. Anal Chem. 2018a Apr 17;90(8):5032–5039. doi: 10.
1021/acs.analchem.7b04713. PMID: 29522331; PMCID: PMC
6220677.
Sun L, Dubiak KM, Peuchen EH, Zhang Z, Zhu G, Huber PW,
Dovichi NJ. Single cell proteomics using frog ( Xenopus laevis)
blastomeres isolated from early stage embryos, which form
a geometric progression in protein content. Anal Chem. 2016
Jul 5;88(13):6653–6657. doi: 10.1021/acs.analchem.6b01921.
PMID: 27314579; PMCID: PMC4940028.
Verbruggen S, Ndah E, Van Criekinge W, Gessulat S, Kuster B,
Wilhelm M, Van Damme P, Menschaert G. PROTEOFORMER
2.0: Further developments in the ribosome prof lingassisted proteogenomic hunt for new proteoforms. Mol
Cell Proteo mics. 2019 Aug 9;18(8 suppl 1):S126–S140.
doi: 10.1074/mcp.RA118.001218. PMID: 31040227; PMCID:
PMC6692777.
Wühr M, Freeman RM Jr, Presler M, Horb ME, Peshkin L, Gygi S,
Kirschner MW. Deep proteomics of the Xenopus laevis egg
using an mRNA-derived reference database. Curr Biol. 2014
Jul 7;24(13):1467–1475. doi: 10.1016/j.cub.2014.05.044.
PMID: 24954049; PMCID: PMC4090281.
Wühr M, Güttler T, Peshkin L, McAlister GC, Sonnett M, Ishihara K,
Groen AC, Presler M, Erickson BK, Mitchison TJ, Kirschner
MW, Gygi SP. The nuclear proteome of a vertebrate. Curr Biol.
2015 Oct 19;25(20):2663–2671. doi: 10.1016/j.cub.2015.08.
047. PMID: 26441354; PMCID: PMC4618192.
Zhao J, Qin B, Nikolay R, Spahn CMT, Zhang G. Translatomics:
The global view of translation. Int J Mol Sci. 2019 Jan
8;20(1):212. doi: 10.3390/ijms20010212. PMID: 30626072;
PMCID: PMC6337585.