168
Xenopus
Bürki, E., 1985. The expression of creatine kinase isozymes in
Xenopus tropicalis, Xenopus laevis laevis, and their viable
hybrid. Biochem. Genet. 23, 73–88. https://doi.org/10.1007/
BF00499114
C. elegans Sequencing Consortium, 1998. Genome sequence
of the nematode C. elegans: A platform for investigating
biology. Science 282, 2012–2018. https://doi.org/10.1126/
science.282.5396.2012
Chang, C.Y., Witschi, E., 1956. Genic control and hormonal reversal
of sex differentiation in Xenopus. Proc. Soc. Exp. Biol. Med.
93, 140–144. https://doi.org/10.3181/00379727-93-22688
Chen, D., Zhang, Q., Tang, W., Huang, Z., Wang, G., Wang, Y.,
Shia, J., Xu, H., Lin, L., Li, Z., Chi, W., Huang, L., Xia, J.,
Zhang, X., Guo, L., Wang, Y., Ma, P., Tang, J., Zhou, G., Liu,
M., Liu, F., Hua, X., Wang, B., Shen, Q., Jiang, Q., Lin, J.,
Chen, X., Wang, H., Dou, M., Liu, L., Pan, H., Qi, Y., Wu,
B., Fang, J., Zhou, Y., Cen, W., He, W., Zhang, Q., Xue, T.,
Lin, G., Zhang, W., Liu, Z., Qu, L., Wang, A., Ye, Q., Chen,
J., Zhang, Y., Ming, R., Van Montagu, M., Tang, H., Van de
Peer, Y., Chen, Y., Zhang, J., 2020. The evolutionary origin
and domestication history of goldf sh (Carassius auratus).
Proc. Natl. Acad. Sci. U.S.A. 117, 29775–29785. https://doi.
org/10.1073/pnas.2005545117/-/DCSupplemental
Chen, Z.J., 2013. Genomic and epigenetic insights into the molecular bases of heterosis. Nat. Rev. Genet. 14, 471–482. https://
doi.org/10.1038/nrg3503
Chung, H.A., Medina-Ruiz, S., Harland, R.M., 2014. Sp8 regulates
inner ear development. Proc. Natl. Acad. Sci. U. S. A. 111,
6329–6334. https://doi.org/10.1073/pnas.1319301111
De Robertis, E.M., Black, P., 1979. Hybrids of Xenopus laevis and
Xenopus borealis express proteins from both parents. Dev.
Biol. 68, 334–339.
Dietrich, F.S., Mulligan, J., Hennessy, K., Yelton, M.A., Allen, E.,
Araujo, R., Aviles, E., Berno, A., Brennan, T., Carpenter, J.,
Chen, E., Cherry, J.M., Chung, E., Duncan, M., Guzman, E.,
Hartzell, G., Hunicke-Smith, S., Hyman, R.W., Kayser, A.,
Komp, C., Lashkari, D., Lew, H., Lin, D., Mosedale, D., Davis,
R.W., 1997. The nucleotide sequence of Saccharomyces
cerevisiae chromosome V. Nature 387, 78–81.
Dosch, R., Gawantka, V., Delius, H., Blumenstock, C., Niehrs, C.,
1997. Bmp-4 acts as a morphogen in dorsoventral mesoderm patterning in Xenopus. Development 124, 2325–2334.
https://doi.org/10.1242/dev.124.12.2325
Dujon, B., Alexandraki, D., André, B., Ansorge, W., Baladron, V.,
Ballesta, J.P.G., Banrevi, A., Bolle, P.A., Bolotin-Fukuhara,
M., Bossier, P., Bou, G., Boyer, J., Buitrago, M.J., Cherét,
G., Colleaux, L., Dalgnan-Fornier, B., del Rey, F., Dion,
C., Domdey, H., Düsterhöft, A., Düsterhus, S., Entian,
K.-D., Erfe, H., Esteban, P.F., Feldmann, H., Fernandes,
L., Fobo, G.M., Fritz, C., Fukuhara, H., Gabel, C., Gaillon,
L., Carcia-Cantalejo, J.M., Garcia-Ramirez, J.J., Gent,
M.E., Ghazvini, M., Goffeau, A., Gonzaléz, A., Grothues,
D., Guerreiro, P., Hegemann, J., Hewitt, N., Hilger, F.,
Hollenberg, C.P., Horaitis, O., Indge, K.J., Jacquier, A.,
James, C.M., Jauniaux, J.C., Jimenez, A., Keuchel, H.,
Kirchrath, L., Kleine, K., Kötter, P., Legrain, P., Liebl, S.,
Louis, E.J., Maia e Silva, A., Marck, C., Monnier, A.-L.,
Möstl, D., Müller, S., Obermaier, B., Oliver, S.G., Pallier,
C., Pascolo, S., Pfeiffer, F., Philippsen, P., Planta, R.J., Pohl,
F.M., Pohl, T.M., Pöhlmann, R., Portetelle, D., Purnelle,
B., Puzos, V., Rad, M.R., Rasmussen, S.W., Remacha,
M., Revuelta, J.L., Richard, G.-F., Rieger, M., RodriguesPousada, C., Rose, M., Rupp, T., Santos, M.A., Schwager,
C., Sensen, C., Skala, J., Soares, H., Sor, F., Stegemann,
J., Tettelin, H., Thierry, A., Tzermia, M., Urrestarazu, L.A.,
van Dyck, L., van Vliet-Reedijk, J.C., Valens, M., Vandenbo,
M., Vilela, C., Vissers, S., von Wettstein, D., Voss, H.,
Wiemann, S., Xu, G., Zimmermann, J., Haasemann, M.,
Becker, I., Mewes, H.W., 1994. Complete DNA sequence
of yeast chromosome XI. Nature 369, 371–378. https://doi.
org/10.1038/369371a0
Elurbe, D.M., Paranjpe, S.S., Georgiou, G., van Kruijsbergen, I.,
Bogdanovic, O., Gibeaux, R., Heald, R., Lister, R., Huynen,
M.A., van Heeringen, S.J., Veenstra, G.J.C., 2017. Regulatory
remodeling in the allo-tetraploid frog Xenopus laevis. Genome
Biol. 18, 198. https://doi.org/10.1186/s13059-017-1335-7
Evans, B.J., 2008. Genome evolution and speciation genetics of
clawed frogs (Xenopus and Silurana). Front. Biosci. 13,
4687–4706. https://doi.org/10.2741/3033
Evans, B.J., Kelley, D.B., Tinsley, R.C., Melnick, D.J., Cannatella,
D.C., 2004. A mitochondrial DNA phylogeny of African
clawed frogs: Phylogeography and implications for polyploid evolution. Mol. Phylogenet. Evol. 33, 197–213. https://
doi.org/10.1016/j.ympev.2004.04.018
Fischer, W.J., Koch, W.A., Elepfandt, A., 2000. Sympatry and
hybridization between the clawed frogs Xenopus laevis laevis and Xenopus muelleri (Pipidae). J. Zool. 252, 99–107.
https://doi.org/10.1111/j.1469-7998.2000.tb00824.x
Fritz, A.F., Cho, K.W.Y., Wright, C.V.E., Jegalian, B.G., de Robertis,
E.M., 1989. Duplicated homeobox genes in Xenopus. Dev.
Biol. 131, 584–588. https://doi.org/https://doi.org/10.1016/
S0012-1606(89)80029-6
Garcia-Fernández, J., Holland, P.W., 1994. Archetypal organization
of the amphioxus Hox gene cluster. Nature 370, 563–566.
https://doi.org/10.1038/370563a0
Geach, T.J., Stemple, D.L., Zimmerman, L.B., 2012. Genetic analysis of Xenopus tropicalis. Methods Mol. Biol. 917, 69–110.
https://doi.org/10.1007/978-1-61779-992-1_5
Goda, T., Abu-Daya, A., Carruthers, S., Clark, M.D., Stemple,
D.L., Zimmerman, L.B., 2006. Genetic screens for mutations
affecting development of Xenopus tropicalis. PLoS Genet. 2,
811–825. https://doi.org/10.1371/journal.pgen.0020091
Gurdon, J.B., Hopwood, N., 2000. The introduction of Xenopus
laevis into developmental biology: Of empire, pregnancy
testing and ribosomal genes. Int. J. Dev. Biol. 44, 43–50.
https://doi.org/10.1387/ijdb.10761846
Haramoto, Y., Saijyo, T., Tanaka, T., Furuno, N., Suzuki, A., Ito, Y.,
Kondo, M., Taira, M., Takahashi, S., 2017. Identif cation and
comparative analyses of Siamois cluster genes in Xenopus
laevis and tropicalis. Dev. Biol. 426, 374–383. https://doi.
org/10.1016/j.ydbio.2016.07.015
Hellsten, U., Harland, R.M., Gilchrist, M.J., Hendrix, D., Jurka, J.,
Kapitonov, V., Ovcharenko, I., Putnam, N.H., Shu, S., Taher,
L., Blitz, I.L., Blumberg, B., Dichmann, D.S., Dubchak, L.,
Amaya, E., Detter, J.C., Fletcher, R., Gerhard, D.S., Goodstein,
D., Graves, T., Grigoriev, I. V., Grimwood, J., Kawashima, T.,
Lindquist, E., Lucas, S.M., Mead, P.E., Mitros, T., Ogino, H.,
Ohta, Y., Poliakov, A. V., Pollet, N., Robert, J., Salamov, A.,
Sater, A.K., Schmutz, J., Terry, A., Vize, P.D., Warren, W.C.,
Wells, D., Wills, A., Wilson, R.K., Zimmerman, L.B., Zorn,
A.M., Grainger, R., Grammer, T., Khokha, M.K., Richardson,
P.M., Rokhsar, D.S., 2010. The genome of the western clawed
frog Xenopus tropicalis. Science 328, 633–636. https://doi.
org/10.1126/science.1183670
Holland, P.W.H., 2013. Evolution of homeobox genes: Wiley interdiscip. Rev. Dev. Biol. 2, 31–45. https://doi.org/10.1002/wdev.78
Honjo, T., Reeder, R.H., 1973. Preferential transcription of Xenopus
laevis ribosomal RNA in interspecies hybrids between Xenopus
Xenopus
Bürki, E., 1985. The expression of creatine kinase isozymes in
Xenopus tropicalis, Xenopus laevis laevis, and their viable
hybrid. Biochem. Genet. 23, 73–88. https://doi.org/10.1007/
BF00499114
C. elegans Sequencing Consortium, 1998. Genome sequence
of the nematode C. elegans: A platform for investigating
biology. Science 282, 2012–2018. https://doi.org/10.1126/
science.282.5396.2012
Chang, C.Y., Witschi, E., 1956. Genic control and hormonal reversal
of sex differentiation in Xenopus. Proc. Soc. Exp. Biol. Med.
93, 140–144. https://doi.org/10.3181/00379727-93-22688
Chen, D., Zhang, Q., Tang, W., Huang, Z., Wang, G., Wang, Y.,
Shia, J., Xu, H., Lin, L., Li, Z., Chi, W., Huang, L., Xia, J.,
Zhang, X., Guo, L., Wang, Y., Ma, P., Tang, J., Zhou, G., Liu,
M., Liu, F., Hua, X., Wang, B., Shen, Q., Jiang, Q., Lin, J.,
Chen, X., Wang, H., Dou, M., Liu, L., Pan, H., Qi, Y., Wu,
B., Fang, J., Zhou, Y., Cen, W., He, W., Zhang, Q., Xue, T.,
Lin, G., Zhang, W., Liu, Z., Qu, L., Wang, A., Ye, Q., Chen,
J., Zhang, Y., Ming, R., Van Montagu, M., Tang, H., Van de
Peer, Y., Chen, Y., Zhang, J., 2020. The evolutionary origin
and domestication history of goldf sh (Carassius auratus).
Proc. Natl. Acad. Sci. U.S.A. 117, 29775–29785. https://doi.
org/10.1073/pnas.2005545117/-/DCSupplemental
Chen, Z.J., 2013. Genomic and epigenetic insights into the molecular bases of heterosis. Nat. Rev. Genet. 14, 471–482. https://
doi.org/10.1038/nrg3503
Chung, H.A., Medina-Ruiz, S., Harland, R.M., 2014. Sp8 regulates
inner ear development. Proc. Natl. Acad. Sci. U. S. A. 111,
6329–6334. https://doi.org/10.1073/pnas.1319301111
De Robertis, E.M., Black, P., 1979. Hybrids of Xenopus laevis and
Xenopus borealis express proteins from both parents. Dev.
Biol. 68, 334–339.
Dietrich, F.S., Mulligan, J., Hennessy, K., Yelton, M.A., Allen, E.,
Araujo, R., Aviles, E., Berno, A., Brennan, T., Carpenter, J.,
Chen, E., Cherry, J.M., Chung, E., Duncan, M., Guzman, E.,
Hartzell, G., Hunicke-Smith, S., Hyman, R.W., Kayser, A.,
Komp, C., Lashkari, D., Lew, H., Lin, D., Mosedale, D., Davis,
R.W., 1997. The nucleotide sequence of Saccharomyces
cerevisiae chromosome V. Nature 387, 78–81.
Dosch, R., Gawantka, V., Delius, H., Blumenstock, C., Niehrs, C.,
1997. Bmp-4 acts as a morphogen in dorsoventral mesoderm patterning in Xenopus. Development 124, 2325–2334.
https://doi.org/10.1242/dev.124.12.2325
Dujon, B., Alexandraki, D., André, B., Ansorge, W., Baladron, V.,
Ballesta, J.P.G., Banrevi, A., Bolle, P.A., Bolotin-Fukuhara,
M., Bossier, P., Bou, G., Boyer, J., Buitrago, M.J., Cherét,
G., Colleaux, L., Dalgnan-Fornier, B., del Rey, F., Dion,
C., Domdey, H., Düsterhöft, A., Düsterhus, S., Entian,
K.-D., Erfe, H., Esteban, P.F., Feldmann, H., Fernandes,
L., Fobo, G.M., Fritz, C., Fukuhara, H., Gabel, C., Gaillon,
L., Carcia-Cantalejo, J.M., Garcia-Ramirez, J.J., Gent,
M.E., Ghazvini, M., Goffeau, A., Gonzaléz, A., Grothues,
D., Guerreiro, P., Hegemann, J., Hewitt, N., Hilger, F.,
Hollenberg, C.P., Horaitis, O., Indge, K.J., Jacquier, A.,
James, C.M., Jauniaux, J.C., Jimenez, A., Keuchel, H.,
Kirchrath, L., Kleine, K., Kötter, P., Legrain, P., Liebl, S.,
Louis, E.J., Maia e Silva, A., Marck, C., Monnier, A.-L.,
Möstl, D., Müller, S., Obermaier, B., Oliver, S.G., Pallier,
C., Pascolo, S., Pfeiffer, F., Philippsen, P., Planta, R.J., Pohl,
F.M., Pohl, T.M., Pöhlmann, R., Portetelle, D., Purnelle,
B., Puzos, V., Rad, M.R., Rasmussen, S.W., Remacha,
M., Revuelta, J.L., Richard, G.-F., Rieger, M., RodriguesPousada, C., Rose, M., Rupp, T., Santos, M.A., Schwager,
C., Sensen, C., Skala, J., Soares, H., Sor, F., Stegemann,
J., Tettelin, H., Thierry, A., Tzermia, M., Urrestarazu, L.A.,
van Dyck, L., van Vliet-Reedijk, J.C., Valens, M., Vandenbo,
M., Vilela, C., Vissers, S., von Wettstein, D., Voss, H.,
Wiemann, S., Xu, G., Zimmermann, J., Haasemann, M.,
Becker, I., Mewes, H.W., 1994. Complete DNA sequence
of yeast chromosome XI. Nature 369, 371–378. https://doi.
org/10.1038/369371a0
Elurbe, D.M., Paranjpe, S.S., Georgiou, G., van Kruijsbergen, I.,
Bogdanovic, O., Gibeaux, R., Heald, R., Lister, R., Huynen,
M.A., van Heeringen, S.J., Veenstra, G.J.C., 2017. Regulatory
remodeling in the allo-tetraploid frog Xenopus laevis. Genome
Biol. 18, 198. https://doi.org/10.1186/s13059-017-1335-7
Evans, B.J., 2008. Genome evolution and speciation genetics of
clawed frogs (Xenopus and Silurana). Front. Biosci. 13,
4687–4706. https://doi.org/10.2741/3033
Evans, B.J., Kelley, D.B., Tinsley, R.C., Melnick, D.J., Cannatella,
D.C., 2004. A mitochondrial DNA phylogeny of African
clawed frogs: Phylogeography and implications for polyploid evolution. Mol. Phylogenet. Evol. 33, 197–213. https://
doi.org/10.1016/j.ympev.2004.04.018
Fischer, W.J., Koch, W.A., Elepfandt, A., 2000. Sympatry and
hybridization between the clawed frogs Xenopus laevis laevis and Xenopus muelleri (Pipidae). J. Zool. 252, 99–107.
https://doi.org/10.1111/j.1469-7998.2000.tb00824.x
Fritz, A.F., Cho, K.W.Y., Wright, C.V.E., Jegalian, B.G., de Robertis,
E.M., 1989. Duplicated homeobox genes in Xenopus. Dev.
Biol. 131, 584–588. https://doi.org/https://doi.org/10.1016/
S0012-1606(89)80029-6
Garcia-Fernández, J., Holland, P.W., 1994. Archetypal organization
of the amphioxus Hox gene cluster. Nature 370, 563–566.
https://doi.org/10.1038/370563a0
Geach, T.J., Stemple, D.L., Zimmerman, L.B., 2012. Genetic analysis of Xenopus tropicalis. Methods Mol. Biol. 917, 69–110.
https://doi.org/10.1007/978-1-61779-992-1_5
Goda, T., Abu-Daya, A., Carruthers, S., Clark, M.D., Stemple,
D.L., Zimmerman, L.B., 2006. Genetic screens for mutations
affecting development of Xenopus tropicalis. PLoS Genet. 2,
811–825. https://doi.org/10.1371/journal.pgen.0020091
Gurdon, J.B., Hopwood, N., 2000. The introduction of Xenopus
laevis into developmental biology: Of empire, pregnancy
testing and ribosomal genes. Int. J. Dev. Biol. 44, 43–50.
https://doi.org/10.1387/ijdb.10761846
Haramoto, Y., Saijyo, T., Tanaka, T., Furuno, N., Suzuki, A., Ito, Y.,
Kondo, M., Taira, M., Takahashi, S., 2017. Identif cation and
comparative analyses of Siamois cluster genes in Xenopus
laevis and tropicalis. Dev. Biol. 426, 374–383. https://doi.
org/10.1016/j.ydbio.2016.07.015
Hellsten, U., Harland, R.M., Gilchrist, M.J., Hendrix, D., Jurka, J.,
Kapitonov, V., Ovcharenko, I., Putnam, N.H., Shu, S., Taher,
L., Blitz, I.L., Blumberg, B., Dichmann, D.S., Dubchak, L.,
Amaya, E., Detter, J.C., Fletcher, R., Gerhard, D.S., Goodstein,
D., Graves, T., Grigoriev, I. V., Grimwood, J., Kawashima, T.,
Lindquist, E., Lucas, S.M., Mead, P.E., Mitros, T., Ogino, H.,
Ohta, Y., Poliakov, A. V., Pollet, N., Robert, J., Salamov, A.,
Sater, A.K., Schmutz, J., Terry, A., Vize, P.D., Warren, W.C.,
Wells, D., Wills, A., Wilson, R.K., Zimmerman, L.B., Zorn,
A.M., Grainger, R., Grammer, T., Khokha, M.K., Richardson,
P.M., Rokhsar, D.S., 2010. The genome of the western clawed
frog Xenopus tropicalis. Science 328, 633–636. https://doi.
org/10.1126/science.1183670
Holland, P.W.H., 2013. Evolution of homeobox genes: Wiley interdiscip. Rev. Dev. Biol. 2, 31–45. https://doi.org/10.1002/wdev.78
Honjo, T., Reeder, R.H., 1973. Preferential transcription of Xenopus
laevis ribosomal RNA in interspecies hybrids between Xenopus